Query= MSMg01no135_l03.b1 MSMg01no135_l03.b1 CHROMAT_FILE:
MSMg01no135_l03.b1 PHD_FILE: MSMg01no135_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:53 2005
(650 letters)
>mm_chr3_40818627_40819676
Length = 1050
Score = 1125 bits (582), Expect = 0.0
Identities = 629/648 (97%), Gaps = 8/648 (1%)
Strand = Plus / Plus
Query: 4 ggaattcctgatgcttcctttgcattgtggggaatgaacagaagcctctcccctgcccag 63
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 208 ggaattcctgatg----ctttgcattgtggggaatgaacagaggcctctcccctgcccag 263
Query: 64 ctgagccctagctcctgtcccaggaggcaggtgtctcctttgcatcctgttacttcttaa 123
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctgagccgtagctcctgtcccaggaggcaggtgtctcctttgcatcctgttacttcttaa 323
Query: 124 tgtcatctttttcatttttcctgggttattctgctctcgtttctggcttgctcccttccc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgtcatctttttcatttttcctgggttattctgctctcgtttctggcttgctcccttccc 383
Query: 184 tttgccctgctgtggcttgcctggctctcctgaggcatgtgttggactgggcgtggtgcg 243
| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
Sbjct: 384 tctgccctgctgtggcttgcttggctctcctgtggcatgtgttggactgggcgtggtgtg 443
Query: 244 actgagtttgattctgagtgcaatcggtgctgcgggtttccttttaagaagaatgctctt 303
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 444 actgagtttgattctgagtgcactcggtgctgcgggtttccttttaagaagaatgctttt 503
Query: 304 cacaaactttaaatatgctttcattttcattcagttcctaatgtttcataattaaaagca 363
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 504 cgcaaactttaaatatgctttcattttcattcagttcctaatgtttcataattaaaagta 563
Query: 364 tttttgacctatcaagtatttcagtgttttttttttaa-ttccttagtttgagtgttttc 422
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 564 tttttgacctatcaagtatttcagtgttttttttttaaattccttagtttgagtgttttc 623
Query: 423 ataagacttttttttttttatgagggagaagtttaaattaacgaatggagactttctttg 482
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ataagacttttttttt---atgagggagaagtttaaattaacgaatggagactttctttg 680
Query: 483 ctaataaaagcatttaatcctgttattttcttccctatactacattagctgcagtccaca 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctaataaaagcatttaatcctgttattttcttccctatactacattagctgcagtccaca 740
Query: 543 aatgttgatacagtatactaatgttcatttgtaatgatttctagaataatttaagatttc 602
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatgttgatacagtgtactaatgttcatttgtaatgatttctagaataatttaagatttc 800
Query: 603 agctttcatctctacttaggaatgtgttatttaatttccaagcaattg 650
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 agctttcatctctacttaggaatgtgttatttaatttccaagcaattg 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_l03.g1 MSMg01no135_l03.g1 CHROMAT_FILE:
MSMg01no135_l03.g1 PHD_FILE: MSMg01no135_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:53 2005
(521 letters)
>mm_chr3_40974509_40975429
Length = 921
Score = 572 bits (296), Expect = e-167
Identities = 299/300 (99%)
Strand = Plus / Minus
Query: 1 agtctcaaatttcactctggtgcttatgattgtgaccagggctggcacaggatatttgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 agtctcaaatttcactctggtgcttatgattgtgaccagggctggcacaggatatttgta 241
Query: 61 ttaaaagctcccaaattcgggccaggcacgaaggtacgtgagaggcaggtggatctctgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ttaaaagctcccaaattcgggccaggcacgaaggtacgtgagaggcaggtggatctctgt 181
Query: 121 gagttcaaggcttggctggtctatatagtgagttcctggccaagcagggctacacagtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gagttcaaggcttggctggtctatatagtgagttcctggccaagcagggctacacagtga 121
Query: 181 gacatatttttatgaagggaagacatgatatgctgtagccaaatgccccactattctgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 gacatatttttatgaagggaagacatgatatgctgtagccaaatgccccactattctgct 61
Query: 241 ttctattgctgtgataaacacaacgaccagaagcaacctgaggaggagaggattcatttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 60 ttctattgctgtgataaacacaacgaccagaagcaacctgaggaggagaggattcgtttc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
