Query= MSMg01no135_m05.b1 MSMg01no135_m05.b1 CHROMAT_FILE:
MSMg01no135_m05.b1 PHD_FILE: MSMg01no135_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:58 2005
(634 letters)
>mm_chr3_109082429_109083462
Length = 1034
Score = 1199 bits (620), Expect = 0.0
Identities = 629/632 (99%)
Strand = Plus / Plus
Query: 1 gcttctaagagattcagtgtctctgtcttgtttctgtgtctcttttctgtctcctctctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcttctaagagattcagtgtctctgtcttgtttctgtgtctcttttctgtctcctctctc 260
Query: 61 tctccctctctctctctccacctccattctttatttttcaatggatttatgtttttaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctccctctctctctctccacctccattctttatttttcaatggatttatgtttttaaat 320
Query: 121 tcctgcatattttcccattttaaacactcatggtgaagtcaatttcctggccaccagacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctgcatattttcccattttaaacactcatggtgaagtcaatttcctggccaccagacc 380
Query: 181 ttcctggcaaccacttcccagtgtccctcaccacgtttctctaactacctgaagttgaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcctggcaaccacttcccagtgtccctcaccacgtttctctaactacctgaagttgaag 440
Query: 241 ctctttagaatttgttcccagatccttttcatgctacaccacctatagaagtccactcag 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctttagaatttgctcccagatccttttcatgctacaccacctatagaagtccactcag 500
Query: 301 tcctaagtctttaattttcccaacaactctccatatttgggaaatgaatccaggcagtcg 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 tcctaagtctttaattttcccaacaactctccatatttgggaaatgaatccacgcagtcg 560
Query: 361 gctttgctcagtgtacctagtctagtcttccaaggggtcattgaaaatgagtgtgggtgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctttgctcagtgtacctagtctagtcttccaaggggtcattgaaaatgagtgtgggtgg 620
Query: 421 acctgaactcaggcttcttcttttgcacagcatccctaacttccttcttcagggttatct 480
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 621 acctgaactcaggcttcttctttcgcacagcatccctaacttccttcttcagggttatct 680
Query: 481 ttctaagaaaatgaacttttccttctccccaaggcttagcctagaaatccatgccttatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttctaagaaaatgaacttttccttctccccaaggcttagcctagaaatccatgccttatt 740
Query: 541 cttgatttatatgtcaccctcagcccccacgtgccaccagtaactaatatttgctgattc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cttgatttatatgtcaccctcagcccccacgtgccaccagtaactaatatttgctgattc 800
Query: 601 cccctgtcctgtggatgaatctgacctctctg 632
||||||||||||||||||||||||||||||||
Sbjct: 801 cccctgtcctgtggatgaatctgacctctctg 832
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_m05.g1 MSMg01no135_m05.g1 CHROMAT_FILE:
MSMg01no135_m05.g1 PHD_FILE: MSMg01no135_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:58 2005
(630 letters)
>mm_chr3_109157667_109158698
Length = 1032
Score = 946 bits (489), Expect = 0.0
Identities = 519/529 (98%), Gaps = 2/529 (0%)
Strand = Plus / Minus
Query: 1 agcacggagacctctgagctactgcatgagtagaatctagcttctctatgaggctaacac 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 729 agcacggagacctctgagctactgcatgagtagaatctagcttctctatgaggctaacgc 670
Query: 61 tgatgtgtg-agtaattacgtcatgttctcctcttaaatcatctctgggagaacccacag 119
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tgatgtgtgcagtaattacgtcatgttctcctcttaaatcatctctgggagaacccacag 610
Query: 120 ctttctgcagaggcttatgctgagctgcagcactcaagccctgctcctccctggtggagg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ctttctgcagaggcttatgctgagctgcagcactcaagccctgctcctccctggtggagg 550
Query: 180 agagttgctgtattatactggatcttcaagggaaagatggagagtgcccccaaattctca 239
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 549 agagttgctgtattttactggatcttcaagggaaagatagagagtgcccccaaattctca 490
Query: 240 tccatcacaaataacggaaacacaaacattgcctccgggtctgatcgacttaacaggtac 299
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 489 tccatcacaaataacggaaacacaaacattgcctccgggtctgattgacttaacaggtac 430
Query: 300 taactttccttagctaaccaaggcttcatcatatttgaagggcaaatgccag-aaaatct 358
|||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 429 taactttccttagcaaaccaatgcttcatcatatttgaagggcaaatgccagaaaaatct 370
Query: 359 aatagctcctgctgaacctaccttcttggagtatcagtaagtgacaaaattattcctggg 418
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aatagctactgctgaacctaccttcttggagtatcagtaagtgacaaaattattcctggg 310
Query: 419 ccgcctccctagtagacattacatacatgattaagagaaagttgactcatgacattacag 478
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ccacctccctagtagacattacatacatgattaagagaaagttgactcatgacattacag 250
Query: 479 tcccaaccagaaaaacactgcaaaacgaaacagatgctgtgaggtgggt 527
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tcccaaccagaaaaacactgcaaaacgaaacagatgctgtgaggtgggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1032
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1022
Effective search space: 633640
Effective search space used: 633640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
