Query= MSMg01no136_f03.b1 MSMg01no136_f03.b1 CHROMAT_FILE:
MSMg01no136_f03.b1 PHD_FILE: MSMg01no136_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:40 2005
(605 letters)
>mm_chr3_77594465_77595469
Length = 1005
Score = 1075 bits (556), Expect = 0.0
Identities = 592/608 (97%), Gaps = 10/608 (1%)
Strand = Plus / Minus
Query: 4 ggaattctcaaa----taaccataaaatatatttaaaaagaagtgagtcattatcttata 59
|||||||||||| || ||||||||||||||||||||||||||||||||||||| |
Sbjct: 994 ggaattctcaaagaagta---ataaaatatatttaaaaagaagtgagtcattatcttaca 938
Query: 60 catatttttaaatttttcattcacaagcttctgaaaccacaactacattctaaaaagcat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 catatttttaaatttttcattcacaagcttctgaaaccacaactacattctaaaaagcat 878
Query: 120 tattttaaatatttaaaaacttgttagttttctctagaattctcagccctaaacaggaca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 tattttaaatatttaaaaacttgttagttttctctagaattctcagccctaaacaggaca 818
Query: 180 tgagtccatctaagactcagtcaacaacatagaattgggggcaaaaagaatgtaagatct 239
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 817 tgagtccatctaagactcagtcaacaacatagaattgggggcaaagagaatgtaagatct 758
Query: 240 ggataat--gggggaggggctgtgaaatggtatcttctgagaggtgacacagctaaagaa 297
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ggataatgggggggagggg-tgtgaaatggtatcttctgagaggtgacacagctaaagaa 699
Query: 298 atcattttctctcagaagctatggctacctacaatatggaagatggggaagcatagacta 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 atcattttctctcagaagctatggctacctacaatatggaagatggggaagcatagacta 639
Query: 358 ttatagctcatgaagtccccctcccccactgaactggatgtgcaacagatattgtccaca 417
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 638 ttatagctcatgaagtccccctcctccactgaactggatgtgcaacagatattgtccaca 579
Query: 418 ataatttactaactgaaatgttgaattaatttattgattaataaaatccaggggtgggtt 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ataatttactaactgaaatgttgaattaatttattgattaataaaatccaggggtgggtt 519
Query: 478 ccctacccaccttaatgctttatattcccaaatgaaacacatacacacagcctttaattt 537
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 518 ccctacccaccttaatgctttatattcccaaataaaacacatacacacagcctttaattt 459
Query: 538 taatacacagtatagagctcaatagctgggccactgactgaccttcacgcagttaatccc 597
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 458 taatacacggtatagagctcaatagcggggccactgactgaccttcacgcagttaatccc 399
Query: 598 aactcaga 605
||||||||
Sbjct: 398 aactcaga 391
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_f03.g1 MSMg01no136_f03.g1 CHROMAT_FILE:
MSMg01no136_f03.g1 PHD_FILE: MSMg01no136_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:40 2005
(642 letters)
>mm_chr3_77426773_77427814
Length = 1042
Score = 1205 bits (623), Expect = 0.0
Identities = 637/642 (99%)
Strand = Plus / Plus
Query: 1 tctaaggatccaagttacaactccttcttccattcccatcccactattgtcctagtggtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctaaggatccaagttacaactccttcttccattcccatcccactattgtcctagtggtg 260
Query: 61 actggagtgatggcatagcagtacacatggtcttgctttctattacctgtgctctctctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actggagtgatggcatagcagtacacatggtcttgctttctattacctgtgctctctctt 320
Query: 121 cctcattcttccaaaatttcagattgctgggccaccagaacatctaccaagatcattagc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctcattcttccaaaatttcagattgctgggccaccagaacatctaccaagatcattagc 380
Query: 181 aatggtagggctcacaaatcctttgatattctataaagcacacatacacaatggagcatg 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 aatggtagggctcacaaatcctttgatattctataaagcacacacacacaatggagcatg 440
Query: 241 gacatgtactaggacagacacacacagatatgttaaaaaccacacatacacatatacaca 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacatgtacaaggacagacacacacagatatgttaaaaaccacacatacacatatacaca 500
Query: 301 cacaaattgcacacaaaagcatccccacacataaacacacatgtacaaacaagcacacag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacaaattgcacacaaaagcatccccacacataaacacacatgtacaaacaagcacacag 560
Query: 361 ctatgaagtccatatacacgaacatacatacacactcagacatacatacttacaagaata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctatgaagtccatatacacgaacatacatacacactcagacatacatacttacaagaata 620
Query: 421 aacatacaaacgcacccacaagaacacacatgtgcatgtacctatattattttttctttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacatacaaacgcacccacaagaacacacatgtgcatgtacctatattattttttctttt 680
Query: 481 attgttgaaaatacatttttttcagatatcatatctcaaaatgtgctatttggacagctc 540
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 681 attgttgaaaatacatttttttcagatatcatatctcaaagtgtgctatttggacagctc 740
Query: 541 agcaatgcatttgctctaacatggtaagttaatatttcatagatcactcagccttctgtc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agcaatgcatttgctctaacatggtaagttaatatttcatagatcactcagccttctgtc 800
Query: 601 tagnaatgtctcttctcttttattgttttattacatctttac 642
||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tagtaatgtctcttctcttttattgttttattacatctttac 842
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space: 652224
Effective search space used: 652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
