ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAA
TTCTCTTAATGTTTCTAATAGCATTGTGGAAATGAATTAAATGAGGGTTT
TGAAAACATGCTGAAAACTAGAATACTATTTAAAGAAGTAGCAATTTTTT
AAGAACAAAATCTAACTCAGATTTCATTTTTTTCCTCACTAATGAACTAA
TTTTAAGTTTAGGCTAGAAAACTACCCATTACCAACACAACCATGTGTGG
GGTTGATTTCATAACATGGACACTCCTGTGCAAACTACAATGAAGTATCT
TTTAGAGACAGAACTGATAATGGAAAGAGCTGTATTTTCAAGCATGGTAC
ATTTGACTCAAGAATTTTATTTCATATCCTCTTTAAAAAATAAAATCTTA
AATTGGGAACACATCAATCCTTTTTCTGGTTAGCACAGGAAAACCTTGGT
CACAGGTTAGTCCATGGGATGGAATCTTCCTCAGAAAAAAGCTATTAACC
TAAGAGCAATGGAGTCACTTCAGACTTCCTTGGCAACTACTCTTCTGAAT
ATCATTTCACAGACCATCTCTGGGATCTGTGACTGGATAAATGAAGAACA
ATAGATATTTTTCAAAATCAGTGCTTACCATGCATTGAGGAATTGTCATA
TGCCGTTCAACACAATCCGAATTCACTGACTTTTCACTTCACACAAACGT
ACCTTCTGTGACATCACACAGCTGAGAGA

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCTGATCTTTCCAAACTTTTATCATGAATGGGTGTTGGAT
CTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGT
CTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTA
AACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGAT
TTCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTAAGGATTT
TTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTT
GGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATGA
GTTGGGTAGAGTACCTTCTACTTCTATCTTGTGAAATAGTTTGTGCAGAA
CTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCA
TCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTATTAATAACTGCTTCTAT
TTCTTTAGGTGATATGGGACTGTTTAGAAGGTCAACTTGATCCTGATTCA
ACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCATTTCGTCCAGGTTT
TCCAGTTTTGTTGAGTATAAGCTTTTGTAGAAGGATCTGATGGTGTTTTG
GATTTCTTCAGGATCTGTTGTTAT

Query= MSMg01no137_b16.b1 MSMg01no137_b16.b1 CHROMAT_FILE:
MSMg01no137_b16.b1 PHD_FILE: MSMg01no137_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:41 2005
         (685 letters)



>mm_chr3_6124630_6125714
          Length = 1085

 Score = 1282 bits (663), Expect = 0.0
 Identities = 678/683 (99%), Gaps = 2/683 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctcttaat-gtttctaatagcattgtggaaatgaattaaatgagggttttgaaaa 62
           ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctcttaatggttt-taatagcattgtggaaatgaattaaatgagggttttgaaaa 262

                                                                       
Query: 63  catgctgaaaactagaatactatttaaagaagtagcaattttttaagaacaaaatctaac 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 catgctgaaaactagaatactatttaaagaagtagcaattttttaagaacaaaatctaac 322

                                                                       
Query: 123 tcagatttcatttttttcctcactaatgaactaattttaagtttaggctagaaaactacc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tcagatttcatttttttcctcactaatgaactaattttaagtttaggctagaaaactacc 382

                                                                       
Query: 183 cattaccaacacaaccatgtgtggggttgatttcataacatggacactcctgtgcaaact 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cattaccaacacaaccatgtgtggggttgatttcataacatggacactcctgtgcaaact 442

                                                                       
Query: 243 acaatgaagtatcttttagagacagaactgataatggaaagagctgtattttcaagcatg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 acaatgaagtatcttttagagacagaactgataatggaaagagctgtattttcaagcatg 502

                                                                       
Query: 303 gtacatttgactcaagaattttatttcatatcctctttaaaaaataaaatcttaaattgg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gtacatttgactcaagaattttatttcatatcctctttaaaaaataaaatcttaaattgg 562

                                                                       
Query: 363 gaacacatcaatcctttttctggttagcacaggaaaaccttggtcacaggttagtccatg 422
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gaacacatcaatcttttttctggttagcacaggaaaaccttggtcacaggttagtccatg 622

                                                                       
Query: 423 ggatggaatcttcctcagaaaaaagctattaacctaagagcaatggagtcacttcagact 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ggatggaatcttcctcagaaaaaagctattaacctaagagcaatggagtcacttcagact 682

                                                                       
Query: 483 tccttggcaactactcttctgaatatcatttcacagaccatctctgggatctgtgactgg 542
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 683 tccttggcaactactcttctgaatatcatttcacagaccatctctgggttctgtgactgg 742

                                                                       
Query: 543 ataaatgaagaacaatagatatttttcaaaatcagtgcttaccatgcattgaggaattgt 602
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 743 ataaatgaagaacaatagatatttttcaaaatcagtgcttaccatgcattaaggaattgt 802

                                                                       
Query: 603 catatgccgttcaacacaatccgaattcactgacttttcacttcacacaaacgtaccttc 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 catatgccgttcaacacaatccgaattcactgacttttcacttcacacaaacgtaccttc 862

                                  
Query: 663 tgtgacatcacacagctgagaga 685
           |||||||||||||||||||||||
Sbjct: 863 tgtgacatcacacagctgagaga 885


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)