BAC Information

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BAC

Clone NameMSMg01-137D08
Chromosome3 (Build37)
Map Location 142,196,419 - 142,196,900
singlet/doubletsinglet
Overlap geneGbp6
Upstream geneUnc5c, Bmpr1b, Gabarapl2-ps3, Pdlim5, Gbp5
Downstream geneGbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2, LOC100040053, LOC100039883, 1700001N15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137D08.T7 (MSMg01no137_d08.b1)MSMg01-137D08.TJ (MSMg01no137_d08.g1)
ACCAG343201AG343202
length777708
length of high quality
(start - end)
---479 (155 - 633)
definitionCHROMAT_FILE: MSMg01no137_d08.b1 PHD_FILE: MSMg01no137_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:49 2005CHROMAT_FILE: MSMg01no137_d08.g1 PHD_FILE: MSMg01no137_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAAAGGGCG
CGGAATTCCCTCTTTGTATACTCTTTGCCTGCACTCTGAGAGGCACTTTG
AACATGGACTTGCCTACTGCAGTCCCTCATATTCTACAAACACGCGAAGG
ACTCTACCTTGGCCACATTACACTACCATCCTGTGTCATTCCGTCGGGTC
CAGGATCTTTGATCTGTACTGTCCTTCTCCCTATTGCTTCAGTGATATCT
CCTACAATTACACTACATGTGCTGGCTCTCTCCGAGAAAAGAATCGTAAA
TAAAAGACGTACTGATCACCATAGTCAAGATGATCGATAATGCACTTCTC
ATAACTGATCTGTCGACAAGGTATAACGCGACAAGAATGAGAAATGACTC
ATGACTGTTCTAACCCACTGCACACTCCGAACCTCAGAGTGAATTTGGAG
TCTTGTTCGCCTCATGCATCCCACATTGACTTTTTTTTGTACATGCAACC
TAGCCTTCTGTTCCGGGCATCATCTGCGAAATCACTGGTATACCCATCCC
AAAGTCCGACGTAAATTAATCTTCTCGGTCTGCAGCCATGTGTGACTGTC
CATAACGGGAACCAAATCTGGCCGGATGTTGAATCCACGAGCCTGTTAAT
CACACTTCGTGCTATAGCCAATAACCAGTACAACCACCCTTGATACTTAT
AGACTTATTTCACCGCTCCAGAGCCCCCGCATCTATCCATCTTATGATGT
CTCCCATATTATTTTGATCGCCCCGCC
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTTTCTACTTGAGGACCTTTTGATCTTCCTGTG
CTGATGGGATGGATGAGGGCGAATGTGTAGGTGTGTGTGAAATGTGTGTA
TGTTATCTCTCTGTCAGACATAGGGTTGGGGAAAACCCTTTCCTAATCTG
AAGGCTGCTGTTTTGTCCAATGACAGTGTCCTTTGCTTTACAGAACCTTT
GCAGTTTCATGAGTTCCCATTTGCCAAGTGTTGATCTTAGAGTCTGAGCC
CTTTGGAAGAACCAGTAGTTTATAACAAGCTCTACCCCATAAACAAACAA
ACAAATAAGTAAATACAAATTAAAATAAAAGATGAAATGCCATCCTGAGC
TTGTTGGATCCTACCTAGAAAAGCAAAACAAAAAACAAAACACCCCTAAA
ATGTAAAATGTAACCCCTGAAAAAGCACAATGGGAAAGCCAAGTGAGATG
ATGCCTTCATTTAATCCCAGTAGATCAAGAGACTATGATAGGATTGGGTG
TACGAGGGCAGCCTATCTACACAGAAAGTTTCATGCTAGTCTGAGCTGCA
CGAGACCTTGTTGAAGTGGAATAAAGTGAAAATGACCAATAATTAGATTT
GTCTTAAAAAGCTCTGCTCTTGGCTTTGCTGGTTGTCAATCATGGCTTCC
CTCTGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_d08.g1 MSMg01no137_d08.g1 CHROMAT_FILE:
MSMg01no137_d08.g1 PHD_FILE: MSMg01no137_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:49 2005
         (479 letters)



>mm_chr3_142196219_142197100
          Length = 882

 Score =  870 bits (450), Expect = 0.0
 Identities = 473/482 (98%), Gaps = 3/482 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctctctgtcagacatagggttggggaaaaccctttcctaatctgaaggctgctgtttt 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 atctctctgtcagacatagggttggggaaaaccctttcctaatctgcaggctgctgtttt 260

                                                                       
Query: 61  gtccaatgacagtgtcctttgctttacagaacctttgcagtttcatgagttcccatttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtccaatgacagtgtcctttgctttacagaacctttgcagtttcatgagttcccatttgc 320

                                                                       
Query: 121 caagtgttgatcttagagtctgagccctttggaagaaccagtagtttataacaagctcta 180
           ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 caagtgttggtcttagagtctgagccctttggaagaaccagtagtttaaaacaagctcta 380

                                                                       
Query: 181 ccccataaacaaacaaacaaataagtaaatacaaattaaaataaaagatgaaatgccatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccccataaacaaacaaacaaataagtaaatacaaattaaaataaaagatgaaatgccatc 440

                                                                       
Query: 241 ctgagcttgttggatcctacctagaaaagcaaaacaaaa---aacaaaacacccctaaaa 297
           |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||
Sbjct: 441 ctgagcttgttggatcctacctagaaaagcaaaacaaaacaaaacaaaacacccctaaaa 500

                                                                       
Query: 298 tgtaaaatgtaacccctgaaaaagcacaatgggaaagccaagtgagatgatgccttcatt 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtaaaatgtaacccctgaaaaagcacaatgggaaagccaagtgagatgatgccttcatt 560

                                                                       
Query: 358 taatcccagtagatcaagagactatgataggattgggtgtacgagggcagcctatctaca 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taatcccagtagatcaagagactatgataggattgggtgtacgagggcagcctatctaca 620

                                                                       
Query: 418 cagaaagtttcatgctagtctgagctgcacgagaccttgttgaagtggaataaagtgaaa 477
           ||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 621 cagaaagcttcatgctagcctgagctgcatgagaccttgttgaagtggaataaagtgaaa 680

             
Query: 478 at 479
           ||
Sbjct: 681 at 682


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 882
Length adjustment: 10
Effective length of query: 469
Effective length of database: 872
Effective search space:   408968
Effective search space used:   408968
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)