Query= MSMg01no137_f04.b1 MSMg01no137_f04.b1 CHROMAT_FILE:
MSMg01no137_f04.b1 PHD_FILE: MSMg01no137_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:58 2005
(628 letters)
>mm_chr3_24460899_24461925
Length = 1027
Score = 1067 bits (552), Expect = 0.0
Identities = 601/618 (97%), Gaps = 3/618 (0%)
Strand = Plus / Minus
Query: 5 gaattcatagtgtaaccagagacataacatactctttcctcaaattagtcctctcaaacc 64
|||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 616 gaattcatagtgcaatcagagacatagcatactctttcctcaaattagtcctctcaaacc 557
Query: 65 aacaaactagttggcattcaaagctattggaaataactttatcagtaccctctcacttta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aacaaactagttggcattcaaagctattggaaataactttatcagtaccctctcacttta 497
Query: 125 tttgaagattctatcatagaactgttataggaaattcagagtctacctcatgttttaaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tttgaagattctatcatagaactgttataggaaattcagagtctacctcatgttttaaaa 437
Query: 185 tcaatttacttgagccatttttttttattttacttgtaaaataaaacgtttacaacaaag 244
||||||||||| ||||| ||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 436 tcaatttacttcagcca--tttttttatcttacttgtaagataaaacgtttacaacaaag 379
Query: 245 gaagctttgaaatgtcattctgcttctaatattactcacagacaatatctta-ttttttt 303
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 378 aaagctttgaaatgtcattctgcttctaatattactcacagacaatatcttatttttttt 319
Query: 304 ttacttaaaacatatagtttaatataatacttggcagaattaggtaaaacaatattatga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttacttaaaacatatagtttaatataatacttggcagaattaggtaaaacaatattatga 259
Query: 364 aatcatgcaagatgtagagtctgtttctgaagaagttacagtccattacactacaaaaat 423
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 258 aatcatgcaagatgtagagtctgtttctgaagaagtcacagtccattacactacaaaaat 199
Query: 424 atggaacgcttcacaaatttgcgtgtcatctgtgcgcaggggctgcgcaaatcttttcta 483
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 198 atggaacgcttcacaaatttgcgtgtcatctgtgcgcaggggccgtgcaaatcttttcta 139
Query: 484 tataattccaattttagtatatgtgctgccgaagcgagcacgacaatatctttttgttgt 543
|||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||
Sbjct: 138 tataattccaattttagtatatttgctgccgaagcgagcatgacaatttctttttgttgt 79
Query: 544 tgttgctgagttaaataccattagaaacatcaaagtcagtgaatcaagtcagtcatcttt 603
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 tgttgttgagttaaataccattagaaacatcaaagtcagtgaatcaagtcagtcatcttt 19
Query: 604 aactagctattgtaaata 621
||||||||||||||||||
Sbjct: 18 aactagctattgtaaata 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1027
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1017
Effective search space: 628506
Effective search space used: 628506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no137_f04.g1 MSMg01no137_f04.g1 CHROMAT_FILE:
MSMg01no137_f04.g1 PHD_FILE: MSMg01no137_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:58 2005
(619 letters)
>mm_chr3_24292689_24293707
Length = 1019
Score = 1151 bits (595), Expect = 0.0
Identities = 613/619 (99%)
Strand = Plus / Plus
Query: 1 aacagaagcacaggtatcacaagatgaacacgcccatgcccatcagtttccaccatgagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 aacagaagcacaggtatcacaagatgaacacgcccatgcccatcagtttccaccacgagt 260
Query: 61 tttgcatgttttcacagttcctccatcctttcctattctgctcaatttgaagcatttgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgcatgttttcacagttcctccatcctttcctattctgctcaatttgaagcatttgaa 320
Query: 121 atcaatctgaaagtttctttgttcagttgtgaggaaataagactgagaccaaagcatggc 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 atcaatctgaaagtttctttgttcagttgtgaagaaataagactgagaccaaagcatggc 380
Query: 181 aaatgtctcagaaaagtcatttacatattcttgaaaataggtaaatttactactctgagg 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 aaatgtctcagaaaagtcatttacatattcttgaaaataggtaaatttacaactctgagg 440
Query: 241 ttcagagtatgctggttttggaaggcagaccttggtgtcccattatggactgcacagtgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcagagtatgctggttttggaaggcagaccttggtgtcccattatggactgcacagtgt 500
Query: 301 ttcaaaagtcattcattcaaacatgggaacttcattcattgctcagcagtcaccattcta 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcaaaagtcattcattcaaacttgggaacttcattcattgctcagcagtcaccattcta 560
Query: 361 ctgcaggtatctgagaacataaaaaaactgtctatcggagatcatgtattgaaaagaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgcaggtatctgagaacataaaaaaactgtctatcggagatcatgtattgaaaagaaaa 620
Query: 421 tagaaataatacacaggtacatttaaataattattttaaaaagtatctctgaagctggga 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagaaataatacacaggtacgtttaaataattattttaaaaagtatctctgaagctggga 680
Query: 481 tgcagattgccttttcctttgggtttcattaaggccatccatagactgccgcatatacag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgcagattgccttttcctttgggtttcattaaggccatccatagactgccgcatatacag 740
Query: 541 acaccaaacccaaacactattttgaaagctaggaagtgcttgtttgcaggagcctgttag 600
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acaccaaacccaaacactattgtgaaagctaggaagtgcttgtttgcaggagcctgttag 800
Query: 601 agctgtctcctgaagtaca 619
|||||||||||||||||||
Sbjct: 801 agctgtctcctgaagtaca 819
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space: 614481
Effective search space used: 614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
