GGGAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAAAGAGGATC
CGCGGAATTCCTGTTCCCTTGGACAGTCTTATGTATCTAGCATATAGAAA
ATGCTTAATAAAATATTTATTGCAAAAATGTAAATGAAGGAAGCTTTGAC
TGCTTTTCACTCAAGGTTATATTTTTGAGATCTCTCTATACTTTCCCATT
AATTAATATTAATTGGTATGCCATATCTCATTGTACAAATGTACTGTAAT
TTATTATTATTATTTTTGTAGACATGAGTTCTTTCTTGTGTCACATCCAG
AGAAACAATGATGAAATACTTTTCCTAATACATTTATTCATGTCCTGCTT
TGACCAGAACTTATTACTAAATGCTGTACTATAGGATGTATTTGAATTTG
ATTTGATTTGATACTGTTACATTTTTTCTCTAATGTGTTAAATTAACTCA
TATTGTTACCAGAGGTCTAGATGCGGTTAACTTATATCAGTTTCTAGTCT
ATGGCTATCAATCTGTCAGATTCTGCGTGTATTTTCTAGTACTTCCAAGT
ATGCCTCTCTGAGTGGACTGCCTTATAAAACAACTTTTTAATCTATAGTC
CTTTTCCATTAAGTTTATTTATTTTGTTTTCTTTCCATTTTTTATTAGGT
ATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCACATAT

CTTCTTCGCTCTNGGTCTCCTTTTTNTCCGTTTCTTTGTTTCTTCCTTAT
CATTTGTCTGTTCTCTTTTTTTCTCCTCTCTCCCCGACCCCCCTCATTAT
CTTTTTGGCTAATTNTTTTGTGGCCCTGTCGCTCTCGGGCGTCTCCCCGT
GTGCTTTTCCGTCTCCGGCGCTCGCATATTATAACGTAGCGACGTGTACC
ACTCGTGTGATTTCGCCCGGGGTGGGGCCATGCTGCTTGTGTTTGTCCTT
TCTGTGCTCTATTATATATTTTTTACACGCCGCAGCCGCCGACAACGTAT
TTGTTTCCTGTGTATCGCCACGGCAGAGAATATACCCGTGGCTCCCCGCC
GCTCAACCATTTATATCATTGTGCGCGGCGTTTTTTGTCTTCTGCGCCAT
CCCTGGCACACACCATATTTATCCCCGTGTGCCGGTCCCCTCATAAAATA
TTCTCAACGCACACACCCCGCGTGTATATATACATACTATATTTAGCTAA
TCTGACGCAGGCACACCTAGACGGATTAATCTACATTCCCACGCGCGGAC
AGCGGATCGACCGTGGTGTGTGTTGCGTCCATGTCAGCCCGATCTATCCC
TTTAACATCATACGGCGCGGCGTTAGTCGGTGCGTGTGTGACCTACGTGT
TAATTGTATCACGGTGCTCATACACTATACAACCGCCGAGAGATGTGATG
CCACACACATGAGTGATACATCCGCGGGGTGAAAGAGAAGATACATGTAT
GAGTAGACACCCGGCGCGTAGATATCTCTCACATCTCTGTTTCCCAGCGC
GGGAGTGAATCTTATTTACTCATTCTACGTGTGACACAGATAAATCGCCG
CAAGGATCATCAAATATAATAACGACACAGATATCGCCCGCGGACTCGAG
CCCTCTTAATATACACACACGCACGCCGAGCGCGTATATAACGGAGCGTG
CGACGGACNTCGCGTATAGTACGTGGTATAAGACAAATCCGTTGCGCGGG
ATTTCGCCGTGAGACATTCGTATCTGATATATGAATGTGAGCAGCTAGAG
AGATTGTACTGTATTAATTGAG

Query= MSMg01no139_c16.b1 MSMg01no139_c16.b1 CHROMAT_FILE:
MSMg01no139_c16.b1 PHD_FILE: MSMg01no139_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:28 2005
         (624 letters)



>mm_chr3_116898594_116899617
          Length = 1024

 Score = 1035 bits (535), Expect = 0.0
 Identities = 544/547 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtcttatgtatctagcatatagaaaatgcttaataaaatatttattgcaaaaatgtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtcttatgtatctagcatatagaaaatgcttaataaaatatttattgcaaaaatgtaa 260

                                                                       
Query: 61  atgaaggaagctttgactgcttttcactcaaggttatatttttgagatctctctatactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgaaggaagctttgactgcttttcactcaaggttatatttttgagatctctctatactt 320

                                                                       
Query: 121 tcccattaattaatattaattggtatgccatatctcattgtacaaatgtactgtaattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcccattaattaatattaattggtatgccatatctcattgtacaaatgtactgtaattta 380

                                                                       
Query: 181 ttattattatttttgtagacatgagttctttcttgtgtcacatccagagaaacaatgatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttattattatttttgtagacatgagttctttcttgtgtcacatccagagaaacaatgatg 440

                                                                       
Query: 241 aaatacttttcctaatacatttattcatgtcctgctttgaccagaacttattactaaatg 300
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 aaatactttacctaatacatttattcatgtcctgctttgaccagaacttattaccaaatg 500

                                                                       
Query: 301 ctgtactataggatgtatttgaatttgatttgatttgatactgttacattttttctctaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgtactataggatgtatttgaatttgatttgatttgatactgttacattttttctctaa 560

                                                                       
Query: 361 tgtgttaaattaactcatattgttaccagaggtctagatgcggttaacttatatcagttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtgttaaattaactcatattgttaccagaggtctagatgcggttaacttatatcagttt 620

                                                                       
Query: 421 ctagtctatggctatcaatctgtcagattctgcgtgtattttctagtacttccaagtatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctagtctatggctatcaatctgtcagattctgcgtgtattttctagtacttccaagtatg 680

                                                                       
Query: 481 cctctctgagtggactgccttataaaacaactttttaatctatagtccttttccattaag 540
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctctctgagtggactgccttatgaaacaactttttaatctatagtccttttccattaag 740

                  
Query: 541 tttattt 547
           |||||||
Sbjct: 741 tttattt 747


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)