Query= MSMg01no139_f20.b1 MSMg01no139_f20.b1 CHROMAT_FILE:
MSMg01no139_f20.b1 PHD_FILE: MSMg01no139_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:44 2005
(464 letters)
>mm_chr3_147737687_147738550
Length = 864
Score = 847 bits (438), Expect = 0.0
Identities = 456/462 (98%), Gaps = 2/462 (0%)
Strand = Plus / Minus
Query: 4 ggaattc-atacatattaccaattagtgtcaaagcaagaattaaagcaacatggtgaccc 62
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ggaattcaatacatattagaaattagtgtcaaagcaagaattaaagcaacatggtgaccc 605
Query: 63 agaaagcatcaccacatttgaaagtgtaactatgattctcacgtcaataaatgtggatta 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 agaaagcatcaccacatttgaaagtgtaactatgattctcacgtcaataaatgtggatta 545
Query: 123 tgtcaatttccatggtgataatattagataaaattataagtatatgatttagagtctctt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tgtcaatttccatggtgataatattagataaaattataagtatatgatttagagtctctt 485
Query: 183 cttttgtgagcaaaatctggttattagggttctctacattcaagatgatacattgttcca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 cttttgtgagcaaaatctggttattagggttctctacattcaagatgatacattgttcca 425
Query: 243 ttctattaccgttacaagccactgtgtatgtattgattttaatgcaggtggatattagct 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ttctattaccgttacaagccactgtgtatgtattgattttaatgcaggtggatattagct 365
Query: 303 tacctcacattttctgtggtgttaggaatatagtgccagggacattttcaggcaactttt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tacctcacattttctgtggtgttaggaatatagtgccagggacattttcaggcaactttt 305
Query: 363 ttaatgaagaacagagtgcatatctgatgtgttaaccctgagagtggaactgtgggcagc 422
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 304 ttaatgaagaagagagtgcatatctgatgtgtaaaccctgagagtggaactgtgggcagc 245
Query: 423 tcattttcattcatagtgagtgggtttttttttgtttgtttt 464
||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 244 tcattttcattcatagtgagtgggttttttttt-tttgtttt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space: 387716
Effective search space used: 387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_f20.g1 MSMg01no139_f20.g1 CHROMAT_FILE:
MSMg01no139_f20.g1 PHD_FILE: MSMg01no139_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:44 2005
(539 letters)
>mm_chr3_147648077_147649015
Length = 939
Score = 944 bits (488), Expect = 0.0
Identities = 521/536 (97%), Gaps = 8/536 (1%)
Strand = Plus / Plus
Query: 1 tttcacaggtgatttctttgaactcctgtttttcttatttctgattgtgtttgcaagtaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcacaggtgatttctttgaactcctgtttttcttatttctgattgtgtttgcaagtaa 260
Query: 61 gatgatacatacatagaaatgattaaaattagcaacccactcccttttcctcatcagaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgatacatacatagaaatgattaaaattagcaacccactcccttttcctcatcagaga 320
Query: 121 ctgtctcttcctctaatttaatcattgctttcattacacacacgtgcgcgtgcgcgcgcg 180
|||||||||||||||||||||||||||||||||||| |||||||| | ||||||
Sbjct: 321 ctgtctcttcctctaatttaatcattgctttcattatacacacgt-----t---cgcgcg 372
Query: 181 cgcgcacacacacacacacacacacacacacacacacacacacacactgaagtacatcct 240
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 cacacacacacacacacacacacacacacacacacacacacacacactgaagtacatcct 432
Query: 241 tattccctacagagcccagttatttccaaaagttgatattaagtcagtagggggaaaata 300
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cattacctacagagcccagttatttccaaaagttgatattaagtcagtagggggaaaata 492
Query: 301 aatgcagttttaatttacaaaatttgactagaaataggctatactccatctttaatatat 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 493 aatgcagttttaatttacaaaatttgagtagaaataggctatactccatctttaatatat 552
Query: 361 aaggtggccatatgtctgggtgtgtcctttgctacttatatatctcaagtagctataaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aaggtggccatatgtctgggtgtgtcctttgctacttatatatctcaagtagctataaat 612
Query: 421 caggtgcataccaccattcctacctattactttttatgtcatcatatgatcttcttgcag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 caggtgcataccaccattcctacctattactttttatgtcatcatatgatcttcttgcag 672
Query: 481 tgagcataatctacccaagtgtaggatagtctttgactaagctacatcttggtatg 536
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 673 tgagcataatctacccaagtgtaggatagtctttgattaagctacatcttggtatg 728
Score = 83.9 bits (43), Expect = 3e-20
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 185 cacacacacacacacacacacacacacacacacacacacacac 227
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 cacacacacacacacacacacacacacacacacacacacacac 883
Score = 81.9 bits (42), Expect = 1e-19
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 186 acacacacacacacacacacacacacacacacacacacacac 227
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 acacacacacacacacacacacacacacacacacacacacac 881
Score = 81.9 bits (42), Expect = 1e-19
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 185 cacacacacacacacacacacacacacacacacacacacaca 226
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 cacacacacacacacacacacacacacacacacacacacaca 884
Score = 72.3 bits (37), Expect = 9e-17
Identities = 43/47 (91%), Gaps = 4/47 (8%)
Strand = Plus / Plus
Query: 185 cacacacacacacacacacacacacacacacacaca----cacacac 227
|||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 849 cacacacacacacacacacacacacacacacacacataaacacacac 895
Score = 72.3 bits (37), Expect = 9e-17
Identities = 43/47 (91%), Gaps = 4/47 (8%)
Strand = Plus / Plus
Query: 185 cacacacacacacacacacacacacacaca----cacacacacacac 227
|||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 855 cacacacacacacacacacacacacacacataaacacacacacacac 901
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 118
Number of extensions: 35
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 8
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
