Query= MSMg01no140_f16.b1 MSMg01no140_f16.b1 CHROMAT_FILE:
MSMg01no140_f16.b1 PHD_FILE: MSMg01no140_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:03 2005
(341 letters)
>mm_chr3_13914040_13914779
Length = 740
Score = 584 bits (302), Expect = e-171
Identities = 329/340 (96%), Gaps = 7/340 (2%)
Strand = Plus / Minus
Query: 5 gaattcttaat---ttccacccattgggttttctttaagaaatctatactgctcagcatg 61
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gaattcttaatcaatt--acccattgggttttctttaagaaatctatactgctcagcatg 678
Query: 62 caggaggtaattcatacagtaaatacgttggaaggttgcctgtttaaccattgcaacaaa 121
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 677 caggaggtaattcgtacagtaaatacgttggaaggttgcctgtttacccattgcaacaaa 618
Query: 122 gttgttcattgtcatgattcaatcaggaagtaactggaaaattcataaggacaacaacaa 181
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 617 gttgttcattgtcatgattcaatcaggaagtaattggaaaattcataaggacaacaacaa 558
Query: 182 caacaaaaacaacaacaatgtaatagcttttgcgggaaaataaaagaatatgtagaattc 241
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 caac-aaaacaacaacaatgtaatagcttttgcgggaaaataaaagaatatgtagaattc 499
Query: 242 ttcaatagaatattttgtgaaataccatctattatatttttagcaaatgatatagggact 301
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 498 ttcaatagaatattttgtgaaataccatcta-catatttttagcaaatgatatagggact 440
Query: 302 ttaatcctataggaagatccacaagcaattaataactgca 341
||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttaatcctataggaagatccacaagcaattaataactgca 400
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 740
Length adjustment: 9
Effective length of query: 332
Effective length of database: 731
Effective search space: 242692
Effective search space used: 242692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_f16.g1 MSMg01no140_f16.g1 CHROMAT_FILE:
MSMg01no140_f16.g1 PHD_FILE: MSMg01no140_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:04 2005
(527 letters)
>mm_chr3_13772244_13773170
Length = 927
Score = 1004 bits (519), Expect = 0.0
Identities = 525/527 (99%)
Strand = Plus / Plus
Query: 1 ttgaatattggatggattactattgttaggtaactctcttgaccatctgagttttttatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgaatattggatggattactattgttaggtaactctcttgaccatctgagttttttatg 260
Query: 61 ttgttgttataactgttgttttgtgagcatctgagtgactctgaaattacaggtagaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgttgttataactgttgttttgtgagcatctgagtgactctgaaattacaggtagaaaa 320
Query: 121 ttaagacctactaaaacttgcggaagtatttatttactatgtgctaatttgtctatttca 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 ttaagacctactaaaacttgcggaaggatttatttactatgtgctaatttgtctatttca 380
Query: 181 aaactattttcctaaaccacaggaaagctgatttttaatttgtagttaatgtatcttgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaactattttcctaaaccacaggaaagctgatttttaatttgtagttaatgtatcttgct 440
Query: 241 agcatttgagggtaagacaaatgaaaaagctatactacttacaatttccagaggaaatta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcatttgagggtaagacaaatgaaaaagctatactacttacaatttccagaggaaatta 500
Query: 301 ttttgaaaaagaaaattgtacgtaattttagtgtgtatctaatagcaattacttaacctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttgaaaaagaaaattgtacgtaattttagtgtgtatctaatagcaattacttaacctt 560
Query: 361 ttgtttgttgtttattcaaaatatacctaaaaccacaagaaccctaaacttttaaaactc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgtttgttgtttattcaaaatatacctaaaaccacaagaaccctaaacttttaaaactc 620
Query: 421 aaaacatattcattatctaagaatgaattaagcataaagccattatttctgattatatgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaacatattcattatctaagaatgaattaagcataaagccattatttctgattatatgt 680
Query: 481 tgagatgattcaaagtttaaaattcaggtaatcttttgagaggatca 527
|||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 681 tgagatgattcaaagttttaaattcaggtaatcttttgagaggatca 727
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
