BAC Information

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BAC

Clone NameMSMg01-140I05
Chromosome3 (Build37)
Map Location 73,444,817 - 73,620,212
singlet/doubletdoublet
Overlap geneBche
Upstream gene2010204N08Rik, Slitrk3
Downstream geneLOC667425, LOC619764, LOC667434, LOC100041551, EG667459
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140I05.T7 (MSMg01no140_i05.b1)MSMg01-140I05.TJ (MSMg01no140_i05.g1)
ACCAG345628AG345629
length713710
length of high quality
(start - end)
661 (53 - 713)626 (85 - 710)
definitionCHROMAT_FILE: MSMg01no140_i05.b1 PHD_FILE: MSMg01no140_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:16 2005CHROMAT_FILE: MSMg01no140_i05.g1 PHD_FILE: MSMg01no140_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,619,556 - 73,620,212)(73,444,817 - 73,445,433)
sequence
GGGGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCCAAATAATGCAAAGCGTTAAACAAGAGTTACTGACTC
AGAGTGTTGCTGGTGATGCAGAGTGAAAGCATTTTAAGAAACTACATACA
CTAAAATACATGTACTAGAATTCAATACTTAAACATTGAGTGGAAAAATG
GTTCTTAGCATTGATTTTATATTTAAACATTAAAAACAGATAAAGTATAA
CTCACATCACTTTCTTTCTTTTATTTTTGAATACGTGAACTGCATGCTCC
TCTAAGGCCACATGGGGATTTATATCCATATATGTCAAATGTTTACAATA
GAATCACAAACAGAAGAGTCATCAGACACTAAAGAGACTCTGCTGAGTGT
GATATTGAATTCATCCACAGCACAATTTTCTTCCCTTGAAAACAGAGATG
ACATTCCATCACCTAAAGGAAAACCTCAAATCCTTGCTGAGATAAACAAG
GCTAACTAATGCACTACTCTATTAACTGTGTAAGCCCCAACTGTAGTCAT
GATCCTCACATGGAAGCCACAAAGCCTTTACTTTGCTCGTTACCCTTCTC
TGAAATAAGGTTTCCTGCTGATTTAAATCTTTTTCATCAAAATAGATATG
TGGTAAATTACAAAAACAACATACCTCCTTCACTGATTTACATAGCTCAT
GCTTTGCTTCATT
NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGAAGAAATTATGTA
ACATAGTTTGTTCTTTTTTCTTCTTGACAGAGAATCAACTTATGGCTTGG
ACACTGTGATGTGAAAAAGCACTACAATAGGTCACGTCATGATTTTTGTT
GTTGTTGTTTTGTGTTTTTATTTTTTCGAGACAGGGTTTCTCTGTATAGC
CCTGGTTGTTCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAG
AAATCCTCCTGCCTCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGT
GTGGCACCACCGCCCGACTTTTTTTTTTTTTTGGTATGATCATTTTTTGA
AGCGGTTGCGGAACTTTACTCAGAATTTTTGGAAAGAGAATTTGTAAGGC
TCCCTCTACTGATATGCTATAATGGTCATTAAATGGAAGTATATGTATAA
AAATTGATTGATTTCATTTGAGATATAAAGAACTGTGAAAGGAGTATTTT
ATCCATTGTCTTCAGCTTGTCACTTTCATTAATATATGTAATATAAAGAA
ACATAGAAAAGCTAAAACCTACACAAATATATCACATAATTTTTAAAAAA
TTGATGTATTAATGACATGTATGGAAGTAATGAGGGGTAAGAACCATGTC
AGCTAGTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_i05.b1 MSMg01no140_i05.b1 CHROMAT_FILE:
MSMg01no140_i05.b1 PHD_FILE: MSMg01no140_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:16 2005
         (661 letters)



>mm_chr3_73619353_73620412
          Length = 1060

 Score = 1203 bits (622), Expect = 0.0
 Identities = 649/658 (98%), Gaps = 1/658 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcccaaataatgcaaagcgttaaacaagagttactgactcagagtgttgctggtg 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 ggaattcccaaataatgtaaagcgttaaacaagagttactgactcagagtgttgctggtg 801

                                                                       
Query: 64  atgcagagtgaaagcattttaagaaactacatacactaaaatacatgtactagaattcaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 atgcagagtgaaagcattttaagaaactacatacactaaaatacatgtactagaattcaa 741

                                                                       
Query: 124 tacttaaacattgagtggaaaaatggttcttagcattgattttatatttaaacattaaaa 183
           ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tac-taaacattgagaggaaaaatggttcttagcattgattttatatttaaacattaaaa 682

                                                                       
Query: 184 acagataaagtataactcacatcactttctttcttttatttttgaatacgtgaactgcat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acagataaagtataactcacatcactttctttcttttatttttgaatacgtgaactgcat 622

                                                                       
Query: 244 gctcctctaaggccacatggggatttatatccatatatgtcaaatgtttacaatagaatc 303
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttcctctaaggccacatggggatttatatccatatatgtcaaatgtttacaatagaatc 562

                                                                       
Query: 304 acaaacagaagagtcatcagacactaaagagactctgctgagtgtgatattgaattcatc 363
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcaaacagaagagtcatcagacactaaagagactctgctgagtgtgatattgaattcatc 502

                                                                       
Query: 364 cacagcacaattttcttcccttgaaaacagagatgacattccatcacctaaaggaaaacc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacagcacaattttcttcccttgaaaacagagatgacattccatcacctaaaggaaaacc 442

                                                                       
Query: 424 tcaaatccttgctgagataaacaaggctaactaatgcactactctattaactgtgtaagc 483
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaattccttgctgagataaacaaggctaactaatgcactactctattaactgtgtaagc 382

                                                                       
Query: 484 cccaactgtagtcatgatcctcacatggaagccacaaagcctttactttgctcgttaccc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 cccaactgtagtcatgatcctcacatggaagccacaaagcctttactttgctcattaccc 322

                                                                       
Query: 544 ttctctgaaataaggtttcctgctgatttaaatctttttcatcaaaatagatatgtggta 603
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctctgagataaggtttcctgctgatttaaatctttttcatcaaaatagatatgtggta 262

                                                                     
Query: 604 aattacaaaaacaacatacctccttcactgatttacatagctcatgctttgcttcatt 661
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 aattacaaaaacaacatacctccttcactgatttacatagcccatgctttgcttcatt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1060
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1050
Effective search space:   683550
Effective search space used:   683550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no140_i05.g1 MSMg01no140_i05.g1 CHROMAT_FILE:
MSMg01no140_i05.g1 PHD_FILE: MSMg01no140_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:16 2005
         (626 letters)



>mm_chr3_73444617_73445642
          Length = 1026

 Score = 1131 bits (585), Expect = 0.0
 Identities = 612/625 (97%), Gaps = 8/625 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagaagaaattatgtaacatagtttgttcttttttcttcttgacagagaatcaacttatg 60
           ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tagaagaaattatgtaaaatagtttgttcttttttcttcttgacagagaaacaacttatg 260

                                                                       
Query: 61  gcttggacactgtgatgtgaaaaagcactacaataggtcacgtcatgatttttgttgttg 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 gcttggacactgtgatgtgaaaaagcactacaataggtcatgtcatgatttttgttgttg 320

                                                                       
Query: 121 ttgttttgtgtttttattttttcgagacagggtttctctgtatagccctggttgttctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgttttgtgtttttattttttcgagacagggtttctctgtatagccctggttgttctgg 380

                                                                       
Query: 181 aactcactttgtagaccaggctggcctcaaactcagaaatcctcctgcctctgcctctgc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 381 aactcactttgtagaccaggctggcctcaaactcagaaatcctcctgcctctgcctc--- 437

                                                                       
Query: 241 ctcccaagtgctgggattaaaggtgtgtggcaccaccgcccgacttttttttttttttgg 300
              |||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||
Sbjct: 438 ---ccaagtgctgggattaaaggtgtgtggcaccaccgcccaactttttttttttt--gg 492

                                                                       
Query: 301 tatgatcattttttgaagcggttgcggaactttactcagaatttttggaaagagaatttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tatgatcattttttgaagcggttgcggaactttactcagaatttttggaaagagaatttg 552

                                                                       
Query: 361 taaggctccctctactgatatgctataatggtcattaaatggaagtatatgtataaaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 taaggctccctctactgatatgctataatggtcattaaatggaagtatatgtataaaaat 612

                                                                       
Query: 421 tgattgatttcatttgagatataaagaactgtgaaaggagtattttatccattgtcttca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tgattgatttcatttgagatataaagaactgtgaaaggagtattttatccattgtcttca 672

                                                                       
Query: 481 gcttgtcactttcattaatatatgtaatataaagaaacatagaaaagctaaaacctacac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gcttgtcactttcattaatatatgtaatataaagaaacatagaaaagctaaaacctacac 732

                                                                       
Query: 541 aaatatatcacataatttttaaaaaattgatgtattaatgacatgtatggaagtaatgag 600
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 733 aaatatatcacataatttttaaaaaattgatgtattaataacatgtatggaagtaatgag 792

                                    
Query: 601 gggtaagaaccatgtcagctagtta 625
           |||||||||||||||||||||||||
Sbjct: 793 gggtaagaaccatgtcagctagtta 817


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)