Query= MSMg01no140_i05.b1 MSMg01no140_i05.b1 CHROMAT_FILE:
MSMg01no140_i05.b1 PHD_FILE: MSMg01no140_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:16 2005
(661 letters)
>mm_chr3_73619353_73620412
Length = 1060
Score = 1203 bits (622), Expect = 0.0
Identities = 649/658 (98%), Gaps = 1/658 (0%)
Strand = Plus / Minus
Query: 4 ggaattcccaaataatgcaaagcgttaaacaagagttactgactcagagtgttgctggtg 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 ggaattcccaaataatgtaaagcgttaaacaagagttactgactcagagtgttgctggtg 801
Query: 64 atgcagagtgaaagcattttaagaaactacatacactaaaatacatgtactagaattcaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 atgcagagtgaaagcattttaagaaactacatacactaaaatacatgtactagaattcaa 741
Query: 124 tacttaaacattgagtggaaaaatggttcttagcattgattttatatttaaacattaaaa 183
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tac-taaacattgagaggaaaaatggttcttagcattgattttatatttaaacattaaaa 682
Query: 184 acagataaagtataactcacatcactttctttcttttatttttgaatacgtgaactgcat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acagataaagtataactcacatcactttctttcttttatttttgaatacgtgaactgcat 622
Query: 244 gctcctctaaggccacatggggatttatatccatatatgtcaaatgtttacaatagaatc 303
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttcctctaaggccacatggggatttatatccatatatgtcaaatgtttacaatagaatc 562
Query: 304 acaaacagaagagtcatcagacactaaagagactctgctgagtgtgatattgaattcatc 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcaaacagaagagtcatcagacactaaagagactctgctgagtgtgatattgaattcatc 502
Query: 364 cacagcacaattttcttcccttgaaaacagagatgacattccatcacctaaaggaaaacc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacagcacaattttcttcccttgaaaacagagatgacattccatcacctaaaggaaaacc 442
Query: 424 tcaaatccttgctgagataaacaaggctaactaatgcactactctattaactgtgtaagc 483
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaattccttgctgagataaacaaggctaactaatgcactactctattaactgtgtaagc 382
Query: 484 cccaactgtagtcatgatcctcacatggaagccacaaagcctttactttgctcgttaccc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 cccaactgtagtcatgatcctcacatggaagccacaaagcctttactttgctcattaccc 322
Query: 544 ttctctgaaataaggtttcctgctgatttaaatctttttcatcaaaatagatatgtggta 603
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctctgagataaggtttcctgctgatttaaatctttttcatcaaaatagatatgtggta 262
Query: 604 aattacaaaaacaacatacctccttcactgatttacatagctcatgctttgcttcatt 661
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 aattacaaaaacaacatacctccttcactgatttacatagcccatgctttgcttcatt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1060
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1050
Effective search space: 683550
Effective search space used: 683550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_i05.g1 MSMg01no140_i05.g1 CHROMAT_FILE:
MSMg01no140_i05.g1 PHD_FILE: MSMg01no140_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:16 2005
(626 letters)
>mm_chr3_73444617_73445642
Length = 1026
Score = 1131 bits (585), Expect = 0.0
Identities = 612/625 (97%), Gaps = 8/625 (1%)
Strand = Plus / Plus
Query: 1 tagaagaaattatgtaacatagtttgttcttttttcttcttgacagagaatcaacttatg 60
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tagaagaaattatgtaaaatagtttgttcttttttcttcttgacagagaaacaacttatg 260
Query: 61 gcttggacactgtgatgtgaaaaagcactacaataggtcacgtcatgatttttgttgttg 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 gcttggacactgtgatgtgaaaaagcactacaataggtcatgtcatgatttttgttgttg 320
Query: 121 ttgttttgtgtttttattttttcgagacagggtttctctgtatagccctggttgttctgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgttttgtgtttttattttttcgagacagggtttctctgtatagccctggttgttctgg 380
Query: 181 aactcactttgtagaccaggctggcctcaaactcagaaatcctcctgcctctgcctctgc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactcactttgtagaccaggctggcctcaaactcagaaatcctcctgcctctgcctc--- 437
Query: 241 ctcccaagtgctgggattaaaggtgtgtggcaccaccgcccgacttttttttttttttgg 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 438 ---ccaagtgctgggattaaaggtgtgtggcaccaccgcccaactttttttttttt--gg 492
Query: 301 tatgatcattttttgaagcggttgcggaactttactcagaatttttggaaagagaatttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tatgatcattttttgaagcggttgcggaactttactcagaatttttggaaagagaatttg 552
Query: 361 taaggctccctctactgatatgctataatggtcattaaatggaagtatatgtataaaaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 taaggctccctctactgatatgctataatggtcattaaatggaagtatatgtataaaaat 612
Query: 421 tgattgatttcatttgagatataaagaactgtgaaaggagtattttatccattgtcttca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tgattgatttcatttgagatataaagaactgtgaaaggagtattttatccattgtcttca 672
Query: 481 gcttgtcactttcattaatatatgtaatataaagaaacatagaaaagctaaaacctacac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gcttgtcactttcattaatatatgtaatataaagaaacatagaaaagctaaaacctacac 732
Query: 541 aaatatatcacataatttttaaaaaattgatgtattaatgacatgtatggaagtaatgag 600
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 733 aaatatatcacataatttttaaaaaattgatgtattaataacatgtatggaagtaatgag 792
Query: 601 gggtaagaaccatgtcagctagtta 625
|||||||||||||||||||||||||
Sbjct: 793 gggtaagaaccatgtcagctagtta 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
