BAC Information

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BAC

Clone NameMSMg01-140P19
Chromosome3 (Build37)
Map Location 82,544,303 - 82,687,884
singlet/doubletdoublet
Overlap geneEG633285
Upstream geneLOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9, Npy2r, LOC100041940
Downstream geneLrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140P19.T7 (MSMg01no140_p19.b1)MSMg01-140P19.TJ (MSMg01no140_p19.g1)
ACCAG345980AG345981
length722719
length of high quality
(start - end)
598 (46 - 643)633 (70 - 702)
definitionCHROMAT_FILE: MSMg01no140_p19.b1 PHD_FILE: MSMg01no140_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:54 2005CHROMAT_FILE: MSMg01no140_p19.g1 PHD_FILE: MSMg01no140_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,544,303 - 82,544,899)(82,687,557 - 82,687,884)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATGCGCGGAAT
TCCATCACTGATCTCTCAATAGAAAGGCATTCAAGAGATCAGAAGGGAAG
CTCAGGATGTATTCTGTAGGGGTGTTCCTCCAGTCTCTCCTTCCCTCTGG
GGGTCTTCTATTCAAGCAAGGTAAGAAAGAGCTGTCCCGCCTCACAGCCC
AGTCTCTGAGTTGGGTGTCCCTTTTATGTCACAGGCTGATAATAACTTCC
AGTGCTACTTCCAGAATATCCCAGCATCCTTCCTGTTGCCTATCCCTTGC
CTACCTCTATGTATCATTCCTTCATTAGCAATTGTCTTTAAAAATTCTAG
CTTACAGCATAAGACATAGCTCTGTAGTACATTCATTGTAAGTATGAGGC
CATTAATCTCCAGAACTGCAATAAATGTGTATTACGTATTTTGTTCCCTG
CCGAGATAGACTGAAGTGTTCTGTAAATTCTAGATGGGGTTATTATCAGT
TCTTATATTGCAAACTTTCTGTACATTTTTGGGGAAATGATAGTCACAAC
AAGAGGCAGAACAGTCCTGGAAGGCTCTTGTTAAATAAAGCACTGAGCCG
TATCTGAGGCAGAAATATTGTAAGCCCAAGTACAGAAAGTGGAGGACAGT
TGTAGTTCCAACTAATTGTACGCATGTGCTATGCTGTTTAAGATTGCAAT
TGATAGAAATACAGAATTCCAT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGGCCAGCCAGAACAACATGAAAAGGCCTT
GACTCAAAACAAAAGCAAAAAGCAGGAAAATAAAAAACAAAAAACACCCT
CCCCCCAAAATAATAGGCAGAATATTTTCTTAATTCAGGGGAAGATGCAG
CAAAACTATCCTTCACAATTGAAAGAAAAATAAAAACATTCCACAGTAAT
CACAAACTGAAAGCTTTCATGACCACTAAGCTAGCACTAGAAAAGATACC
TGAAGCAATTCTACACACTGAAAAATAAACAAAACAAACAAACAAACAAA
AAACATCATGAGGTCATGAAAAAGAAGAGAGAATCAGTAAATGAGCAAAT
GAGAATTGGAAATCTATCAAACATTTAAAAAAAAAAACCCAACAAAATGT
CATGAATTAATACATACTTCATAACTCTCAATGTTAGTGATCTCAATTCT
TCAATGATAAAACAAACTAGCAGAGTGGATTAAAAATAGCTCCCCATCTA
CTTCTTGCCTGCAAAGAAAAGCAAAGTCTTAGAGCCCAATGCTTGGCTGC
AAGCATCTGCATCTGTCTGAGTCAGCTGAGGGTAGAGTCACTTAGAGGAC
AGCCATGCTTGGTTCCTGTGTGCAAGCACTACATAGCATCAGTAGTAGTG
TCAGGGTTTGGTACCCGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_p19.b1 MSMg01no140_p19.b1 CHROMAT_FILE:
MSMg01no140_p19.b1 PHD_FILE: MSMg01no140_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:54 2005
         (598 letters)



>mm_chr3_82544102_82545099
          Length = 998

 Score = 1147 bits (593), Expect = 0.0
 Identities = 596/597 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   gaattccatcactgatctctcaatagaaaggcattcaagagatcagaagggaagctcagg 61
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattccatcactgaactctcaatagaaaggcattcaagagatcagaagggaagctcagg 261

                                                                       
Query: 62  atgtattctgtaggggtgttcctccagtctctccttccctctgggggtcttctattcaag 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atgtattctgtaggggtgttcctccagtctctccttccctctgggggtcttctattcaag 321

                                                                       
Query: 122 caaggtaagaaagagctgtcccgcctcacagcccagtctctgagttgggtgtccctttta 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 caaggtaagaaagagctgtcccgcctcacagcccagtctctgagttgggtgtccctttta 381

                                                                       
Query: 182 tgtcacaggctgataataacttccagtgctacttccagaatatcccagcatccttcctgt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgtcacaggctgataataacttccagtgctacttccagaatatcccagcatccttcctgt 441

                                                                       
Query: 242 tgcctatcccttgcctacctctatgtatcattccttcattagcaattgtctttaaaaatt 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgcctatcccttgcctacctctatgtatcattccttcattagcaattgtctttaaaaatt 501

                                                                       
Query: 302 ctagcttacagcataagacatagctctgtagtacattcattgtaagtatgaggccattaa 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ctagcttacagcataagacatagctctgtagtacattcattgtaagtatgaggccattaa 561

                                                                       
Query: 362 tctccagaactgcaataaatgtgtattacgtattttgttccctgccgagatagactgaag 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tctccagaactgcaataaatgtgtattacgtattttgttccctgccgagatagactgaag 621

                                                                       
Query: 422 tgttctgtaaattctagatggggttattatcagttcttatattgcaaactttctgtacat 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tgttctgtaaattctagatggggttattatcagttcttatattgcaaactttctgtacat 681

                                                                       
Query: 482 ttttggggaaatgatagtcacaacaagaggcagaacagtcctggaaggctcttgttaaat 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ttttggggaaatgatagtcacaacaagaggcagaacagtcctggaaggctcttgttaaat 741

                                                                    
Query: 542 aaagcactgagccgtatctgaggcagaaatattgtaagcccaagtacagaaagtgga 598
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 aaagcactgagccgtatctgaggcagaaatattgtaagcccaagtacagaaagtgga 798


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no140_p19.g1 MSMg01no140_p19.g1 CHROMAT_FILE:
MSMg01no140_p19.g1 PHD_FILE: MSMg01no140_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:54 2005
         (633 letters)



>mm_chr3_82687557_82688589
          Length = 1033

 Score =  627 bits (324), Expect = 0.0
 Identities = 327/328 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggccagccagaacaacatgaaaaggccttgactcaaaacaaaagcaaaaagcaggaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 caggccagccagaacaacatgaaaaggccttgactcaaaacaaaagcaaaaagcaggaaa 269

                                                                       
Query: 61  ataaaaaacaaaaaacaccctccccccaaaataataggcagaatattttcttaattcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ataaaaaacaaaaaacaccctccccccaaaataataggcagaatattttcttaattcagg 209

                                                                       
Query: 121 ggaagatgcagcaaaactatccttcacaattgaaagaaaaataaaaacattccacagtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ggaagatgcagcaaaactatccttcacaattgaaagaaaaataaaaacattccacagtaa 149

                                                                       
Query: 181 tcacaaactgaaagctttcatgaccactaagctagcactagaaaagatacctgaagcaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 tcacaaactgaaagctttcatgaccactaagctagcactagaaaagatacctgaagcaat 89

                                                                       
Query: 241 tctacacactgaaaaataaacaaaacaaacaaacaaacaaaaaacatcatgaggtcatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88  tctacacactgaaaaataaacaaaacaaacaaacaaacaaaaaacatcatgaggtcatga 29

                                       
Query: 301 aaaagaagagagaatcagtaaatgagca 328
           ||||||||||||| ||||||||||||||
Sbjct: 28  aaaagaagagagagtcagtaaatgagca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)