BAC Information

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BAC

Clone NameMSMg01-141A23
Chromosome3 (Build37)
Map Location 12,632,899 - 12,633,636
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667999, EG621965, LOC100039798
Downstream geneEG668033, LOC668037, LOC100039823, LOC100039861, 0710005M24Rik, LOC100041679
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141A23.T7 (MSMg01no141_a23.b1)MSMg01-141A23.TJ (MSMg01no141_a23.g1)
ACCAG346033AG346034
length1,0591,209
length of high quality
(start - end)		769 (88 - 856)738 (88 - 825)
definitionCHROMAT_FILE: MSMg01no141_a23.b1 PHD_FILE: MSMg01no141_a23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:02 2005CHROMAT_FILE: MSMg01no141_a23.g1 PHD_FILE: MSMg01no141_a23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCGACTAAGNNNNTTTTCAATGGGCGCTNACGACTCCTAAGGGAGAGGA
TCCGCGGAATTCATGAAGAAATGAAAACCGTTTGAACAGCATACCCAAAC
TTATGGGATGAAATAAAACCAGTATTAAGAGGAACATTCAGAGTATTATG
TGCCTTCATAAAGAAACTATACATTTCATACTAGCAATTTAACAATACAG
CTGAAAGCTCTAGAAAAAGCCCCAATAGAAGTAGAAGGTGGGAACTAATG
AAACTCATAGCTGAAATTAATAAACTAGAAAAAAGGAAAACACAACAAAG
AATCAATGAATATAAGAATTTCATCTTTGAGAAAATGAACAAGATAGACA
AACCTTTATCTGCACTAACTAAGAGGCAGAGAAAGACTAAATTAACAAAA
GAAGAAAGAAATTGGGGCATAAAAACAGACAACAAGGAAATTCAAAGAAT
CATTAGGTCGTACTTCAAAAGCTTGTGCTTGACAAGGAAACTCTAAAAGA
AGCAACAAATTTTCTCCATAGATACCACTTTGGAAATCTTTATGGTGATG
TCTCAGAAAACTGGAAATAGTTCCACCTCAGCACACAGCTACACCACTTC
TGGACATATACCCAAAAAACACTTGAGCCTACATAAAGGAATCTTGCTCA
ACAATCTGAATTGTAGTTGTTTTCATAATAGGCAGAAACTGGAGAAAAAA
AAAATGATGTCCCTCAAACCAAGAATGGATAAAGAAAATGTGATATATTT
ACACCATGAAGTATTATTCAGCTGTTAAAAAGTGACTTCAGAAATTTGCA
AGCAAAGATATGCAAATTGAAAAATTGTCATAATGAGTTAACTCAGACAG
ATGTGCTTTGATGAAAGTGGGGCAGAATAATGAAAGCGGCCAGCCCATTT
CTTGTCTAACTTGATACCCATACCATAGATGCAATCCCCCCCCTGAAAAT
TGAATGAAGGGGACAAGAATTGGGGCTAGATAGCCCCAGATACCTTGGGA
CGGAACTTAATTAAAACGGTCCCAAAATATTCCTTAAAGGGAAAGGGTTC
CCCTTTAGG

NCCCAACCANTTNTAAAAGAGGGGAGNCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAGGGAGCAGGAAGAATAA
GACACTGGCACTGATCTGACAGTCTTTCACCAACAAGGCCACATTTCCTC
CAACAAGGCCTCACCTACTAGTACAAGGCCACATCTAATTTCTCTCAAGT
AGTGCCATTCCCTTATGACCAAGCACTGGAATACATGAGTCCACAGGTGT
CATTCTTATTCAAACCACTGCAGAAAGCAAAATTAGAAATTCACTGAAGT
ATAATTGTTTCTTTGTTCATAATTAAAATTATTTTCAGGACACCATGTAA
ATAATGAGAGCTACGCTTTATCCAAGTAGAACTGCTCTTGTCTGTAGTTA
CCATTAATATAACTTTAAATAGTTTAATTTTTGGTACATACTCTTTAGTG
ATTTAAATATAAAATGGGGTTGGAAGGAAGGCCCAGTGATTAAAGGTGCT
TGCTGCTAGTCCTGGAGTACTGCACTTGATCCCTGGACACTACAATCTAT
ACGCTAGAATGGAATCACAAATTTTCCTCTGACTTCCACATAAGCACAAC
CCACATGCACTGAATAAAAATGTAAAACTAAATTAACTAACTTACTTTTT
AAAGCAGGGCTAGGGAGAAGACCCATTAGTGACTCATTCATTTTGCTAAT
TTAGGGTACCAATTTCTGTTCAGAGCACCTGTATCAAGCAGCTCACAACA
TTGGATAAGTACATCTCTAGCTGTTGGGAATCTCAATTTTGAATTCTAGA
TCCATTATCAATATCACCTGCATATATCAACATTCTAACATATATATTTT
GTTGAAACTATGTTGTAAATCTTTACAGACAGAAATAAAGTTTATATTAA
TGACCCCAAATTAAATGGTAGCATAAATTACAGATACAAATTTCTAAGTT
AACAGAATGTTGGAATTTAATAAATTCCCTTTACCATATGGAAAAGACCG
GTTTCTTTTTAGGAACAAAGGTCCCTCGGTTCCAATTAAAATTCCGGTTT
TAAAAGGTTGTAATAAAAAAGGAAAATATTTTTTATGGGGCCCCTTTGTG
GGGAAAGGCGCTTTTTTGAAAACCCCCTGGGTCCCCCATAAGTTTCCCCT
CCCGGTAAAAAATTTTTTCCGCTAATATTTCTTTATTATAATAACCACCT
AGTTTGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_a23.g1 MSMg01no141_a23.g1 CHROMAT_FILE:
MSMg01no141_a23.g1 PHD_FILE: MSMg01no141_a23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:02 2005
         (738 letters)



>mm_chr3_12632699_12633836
          Length = 1138

 Score = 1396 bits (722), Expect = 0.0
 Identities = 734/738 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaggaagaataagacactggcactgatctgacagtctttcaccaacaaggccacatttc 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 gcaggaagaataagacattggcactgatctgacagtctttcaccaacaaggtcacatttc 260

                                                                       
Query: 61  ctccaacaaggcctcacctactagtacaaggccacatctaatttctctcaagtagtgcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctccaacaaggcctcacctactagtacaaggccacatctaatttctctcaagtagtgcca 320

                                                                       
Query: 121 ttcccttatgaccaagcactggaatacatgagtccacaggtgtcattcttattcaaacca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcccttatgaccaagcactggaatacatgagtccacaggtgtcattcttattcaaacca 380

                                                                       
Query: 181 ctgcagaaagcaaaattagaaattcactgaagtataattgtttctttgttcataattaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgcagaaagcaaaattagaaattcactgaagtataattgtttctttgttcataattaaa 440

                                                                       
Query: 241 attattttcaggacaccatgtaaataatgagagctacgctttatccaagtagaactgctc 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 attattttcaggacaccatgtaaataatgagagctatgctttatccaagtagaactgctc 500

                                                                       
Query: 301 ttgtctgtagttaccattaatataactttaaatagtttaatttttggtacatactcttta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgtctgtagttaccattaatataactttaaatagtttaatttttggtacatactcttta 560

                                                                       
Query: 361 gtgatttaaatataaaatggggttggaaggaaggcccagtgattaaaggtgcttgctgct 420
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 gtgatttaaatataaaatggggttggaaggaaggcacagtgattaaaggtgcttgctgct 620

                                                                       
Query: 421 agtcctggagtactgcacttgatccctggacactacaatctatacgctagaatggaatca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtcctggagtactgcacttgatccctggacactacaatctatacgctagaatggaatca 680

                                                                       
Query: 481 caaattttcctctgacttccacataagcacaacccacatgcactgaataaaaatgtaaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caaattttcctctgacttccacataagcacaacccacatgcactgaataaaaatgtaaaa 740

                                                                       
Query: 541 ctaaattaactaacttactttttaaagcagggctagggagaagacccattagtgactcat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctaaattaactaacttactttttaaagcagggctagggagaagacccattagtgactcat 800

                                                                       
Query: 601 tcattttgctaatttagggtaccaatttctgttcagagcacctgtatcaagcagctcaca 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tcattttgctaatttagggtaccaatttctgttcagagcacctgtatcaagcagctcaca 860

                                                                       
Query: 661 acattggataagtacatctctagctgttgggaatctcaattttgaattctagatccatta 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 acattggataagtacatctctagctgttgggaatctcaattttgaattctagatccatta 920

                             
Query: 721 tcaatatcacctgcatat 738
           ||||||||||||||||||
Sbjct: 921 tcaatatcacctgcatat 938


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 738
Length of database: 1138
Length adjustment: 10
Effective length of query: 728
Effective length of database: 1128
Effective search space:   821184
Effective search space used:   821184
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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