BAC Information

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BAC

Clone NameMSMg01-141C09
Chromosome3 (Build37)
Map Location 140,941,705 - 140,942,274
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621343, 4930590L14Rik, Pdha2
Downstream geneUnc5c, LOC100039923, Bmpr1b, Gabarapl2-ps3, Pdlim5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141C09.T7 (MSMg01no141_c09.b1)MSMg01-141C09.TJ (MSMg01no141_c09.g1)
ACCAG346100AG346101
length1,0801,183
length of high quality
(start - end)		566 (89 - 654)520 (93 - 612)
definitionCHROMAT_FILE: MSMg01no141_c09.b1 PHD_FILE: MSMg01no141_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:13 2005CHROMAT_FILE: MSMg01no141_c09.g1 PHD_FILE: MSMg01no141_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCATTCTCTNNNNNAGCAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTGAAATCCAGTAGAGATCCTTTAAGGCCAAGGGATGTA
AAATTTAACGGATGCTCAGCCCATTCTGATGAAGATGGTCTTGCCACAAA
TTTTCTATATCCCTGCTTTATGAAGCACTGGCTGACTTGTGAAATATTAA
CCTGTGTGGCTCTCTCTGTCACATTTTTGTACCTTTGGCAGTCTTTCAAT
GCTGTCTTCATCTTCACAGTGAAACTTTCATGTAGTGGCCAATTTTTTCC
AATTAAACACAATTCTCCTCAAATTTAAATCACACACACCATTTATCACA
GCTGCTAAACCTGCTGCTTAAATAACTTTTGCACTCCAGTTTAGAAGTGT
CTCATTTCAATGATGAATTAAGAGATACAGATAAAGCAGCTCGTCTACTC
GTTAAAGCTATCCTGAATGTTTAGAATCCAACAGCTTCACGAGCTGAGGA
TGAATAAAGAAACTGGAAACAAAAGTATCAGGAAGAAATAATCAGCAGGT
CAGACAGAGATACAGCCTATCAGAGGACGATGACTGAAACCTTGATTCCT
GTTTTTTTTTGGTTTTGGTTTTGGTTTTGGTTTTGGCTTTGGTTTTGGTT
TTGNNNNTNNNNNNNNNTTNNNNTNNNNTTNTNTTTTTTTTTTTTTTTTT
TTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTN
TTTTTTTTTNTTTTTTTTTTTTTTTNTNNTTTTTTTTTTTTTTTTTNTTT
TTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTT
TTTTTTTTTTNTTTTTNTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTNT
TNTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTNTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

NCCCCGTTCTTTNNNNTTACATGGGATGCTGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAAGTAACTCTGTA
CCCCATTTTTCTATAGGGTTATTCCATTCTCTGGAATCTAACTTCTTCAG
TTCTTTGTAAATATTGGATATTGGTCCTCTATCGGATGTAAGATTGGCAA
AGATCTTTTCCCAATGTGTTGGTTGCTTTTTGCTGGAAAAAAAAAAAAGC
CTGATATGGCTGTCTCCTGAGTGGCCCTGCTAGAGCCTTTTAAATACAGA
GGATGATGTTAGCAGCCAACCATTGGAATGAGCGTGGAGTCCCTAATAGA
GGAGTTAGATAAGGGACTGACAGAGTAGAAGGGTTTTGCAACCTCATGGG
AAGAACAACAATATCAACCAACCAGACACCCCCTCCCCTCCAACCCAGAA
CTCCCAGGGACTAATCAACAAAGGAGTACACATGGCTCTAGCTGCATATT
TCGAAGAGAATGACCTTTTCATGCATCAATGGTAGGAGAGGTCCTTGGTT
CTATGAAAGCTCGATAGATGCCCCAGTGTAGTGGAACTGAGAGTGGGGAG
GTGGGTGGNTGNNNNNNNTNNTNNNNNNNNNNNGNTNNNNNTTGTTTTNT
TTTTTTTTTTTTTTTTTTTTTNTTTTTTNTTTTTTTTTTTTTTNNTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTNTTTTTTTTTTTNTTNTTTTTTTTTTTTTTTTTN
TTTTTNTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTN
TTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTT
TTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTNTTTTTT
TTTTTTTTTTNNTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_c09.b1 MSMg01no141_c09.b1 CHROMAT_FILE:
MSMg01no141_c09.b1 PHD_FILE: MSMg01no141_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:13 2005
         (566 letters)



>mm_chr3_140941505_140942470
          Length = 966

 Score = 1025 bits (530), Expect = 0.0
 Identities = 558/570 (97%), Gaps = 5/570 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaagggatgtaaaatttaacggatgctcagcccattctgatgaagatggtcttgccaca 60
           ||||||||||||||||||||||||||||||||  |||||||||||||||||||||  |||
Sbjct: 201 ccaagggatgtaaaatttaacggatgctcagctgattctgatgaagatggtcttgggaca 260

                                                                       
Query: 61  aattttctatatccctgctttatgaagcactggctgacttgtgaaatattaacctgtgtg 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattttctatatccctgctttatgaagcactggctgacttgtgaaatattaacctgtgtg 320

                                                                       
Query: 121 gctctctctgtcacatttttgtacctttggcagtctttcaatgctgtcttcatcttcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctctctctgtcacatttttgtacctttggcagtctttcaatgctgtcttcatcttcaca 380

                                                                       
Query: 181 gtgaaactttcatgtagtggccaattttttccaattaaacacaattctcctcaaatttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgaaactttcatgtagtggccaattttttccaattaaacacaattctcctcaaatttaa 440

                                                                       
Query: 241 atcacacacaccatttatcacagctgctaaacctgctgcttaaataacttttgcactcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcacacacaccatttatcacagctgctaaacctgctgcttaaataacttttgcactcca 500

                                                                       
Query: 301 gtttagaagtgtctcatttcaatgatgaattaagagatacagataaagcagctcgtctac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtttagaagtgtctcatttcaatgatgaattaagagatacagataaagcagctcgtctac 560

                                                                       
Query: 361 tcgttaaagctatcctgaatgtttagaatccaacagcttcacgagctgaggatgaataaa 420
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 561 tcgttaaagctatcctgaatgtttagaatccaacagcttcatgagctgaggatgaaaaaa 620

                                                                       
Query: 421 gaaactggaaacaaaagtatcaggaagaaataatcagcaggtcagacagagatacagcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaactggaaacaaaagtatcaggaagaaataatcagcaggtcagacagagatacagcct 680

                                                                       
Query: 481 atcagaggacgatgactgaaaccttgattcctgtttttttt-----tggttttggttttg 535
           |||||||||||||||||||||||||||||||||||||||||     ||||||||||||||
Sbjct: 681 atcagaggacgatgactgaaaccttgattcctgttttttttggttttggttttggttttg 740

                                         
Query: 536 gttttggttttggctttggttttggttttg 565
           ||||||||||||||||||||||||||||||
Sbjct: 741 gttttggttttggctttggttttggttttg 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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