Query= MSMg01no141_f08.b1 MSMg01no141_f08.b1 CHROMAT_FILE:
MSMg01no141_f08.b1 PHD_FILE: MSMg01no141_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:36 2005
(716 letters)
>mm_chr3_57028468_57029582
Length = 1115
Score = 1317 bits (681), Expect = 0.0
Identities = 707/716 (98%), Gaps = 1/716 (0%)
Strand = Plus / Minus
Query: 1 gtcattgcattttctctcgcactgtacactgcttcagtttcctataggactgccagaatc 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 915 gtcattgcattttctctcgcactgtacactgattcagtttcctataggactgccagaatc 856
Query: 61 cacaggagtacttttctgttacgtcttgaaactactttaaaccacatttattattcccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 cacaggagtacttttctgttacgtcttgaaactactttaaaccacatttattattcccaa 796
Query: 121 catttgatattaatagtatgttaaactgctctactatgtgtaaatactacataggagggc 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 catctgatattaatagtatgttaaactgctctactatgtgtaaatactacataggagggc 736
Query: 181 tttccctcaggattatgtcagttattatatatatgacatcctgttagccacccccaaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tttccctcaggattatgtcagttattatatatatgacatcctgttagccacccccaaaga 676
Query: 241 gaaagagctataatccatgcatgatacgactcaggatatgctatataaaaatggtcttat 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 675 gaaagagctataatccatgcatgatatgactcaggatatgctatataaaaatggtcttat 616
Query: 301 tattgcatctgaaaaagcacataggtcagatactgtacaatatgtgggacaactagttat 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tattgcatctgaaaaagcacaaaggtcagatactgtacaatatgtgggacaactagttat 556
Query: 361 tagaacaactattaaaccacaaaaatgtgtattagataagacaatttaaaaacaactact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tagaacaactattaaaccacaaaaatgtgtattagataagacaatttaaaaacaactact 496
Query: 421 ttcaggaattattagagaatattagctggctgcatctacatcaagaatacctaattacgc 480
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ttcaggaattattagggaatattagctggctgcatctacatcaagaatacctaattacgc 436
Query: 481 attaactagcctatttaaaaggaaagatggcatcggttagtcctcacatattatcttgag 540
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 435 actaactagcctatttaaaaggaaagatggcattggttagtcctcacatattatcttgag 376
Query: 541 aggcacaggaagaactacagctatttgaatccagattctaaaaggcatttttgtatcatg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aggcacaggaagaactacagctatttgaatccagattctaaaaggcatttttgtatcatg 316
Query: 601 tggatcctttgctgcctttnaacttacatatttccccccactaaatcagtagttcttaat 660
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 315 tggatcctttgctgcctttaaacttacatatttccccc-actaaatcagtagttcttaat 257
Query: 661 ttctaggttgttacctctttgagagttgaataactttcatggggggagcaactaag 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ttctaggttgttacctctttgagagttgaataactttcatggggggagcaactaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 716
Length of database: 1115
Length adjustment: 10
Effective length of query: 706
Effective length of database: 1105
Effective search space: 780130
Effective search space used: 780130
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no141_f08.g1 MSMg01no141_f08.g1 CHROMAT_FILE:
MSMg01no141_f08.g1 PHD_FILE: MSMg01no141_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:36 2005
(479 letters)
>mm_chr3_56876365_56877242
Length = 878
Score = 781 bits (404), Expect = 0.0
Identities = 447/463 (96%), Gaps = 5/463 (1%)
Strand = Plus / Plus
Query: 1 ctatttatagntagctgctgttggattacctgttaa--atagcctatcccccattccaat 58
|||||||||| ||||||||||||||||| ||| | |||||||||| |||||||||
Sbjct: 201 ctatttatagctagctgctgttggattagctg--gacgatagcctatcagtcattccaat 258
Query: 59 aaactttttacccattccacaagttctatgaatctagagaaccctgactaatacagattt 118
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 259 aaactttatacccattccacaagttctatgactctagagaaccctgactaatacagattt 318
Query: 119 attaatacctgatcactaggaaggaggcattctctcctgagatatctacacaggaaaagc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 attaatacctgatcactaggaaggaggcattctctcctgagatatctacacaggaaaagc 378
Query: 179 atgaagatgctatggttaagtacagttatataaaagctgtatctacaaaaatgaagccaa 238
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 379 atgaagatgctatggttaagtacagttatataaaagctgtatctacaaaa-tgaagccaa 437
Query: 239 gggctgggaaggaaattaagtggttaagaagacttttagatcttgaagaggacttgggtt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gggctgggaaggaaattaagtggttaagaagacttttagatcttgaagaggacttgggtt 497
Query: 299 taattcccagcacccatatcaggtttatgatgaccatctctaactctaactccaagggat 358
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 498 taattcccagcacccatatcaggcaaatgatgaccatctctaactctaactccaagggat 557
Query: 359 ttgatgtcctcttctggcttccataagccctgaacacatgtgctacacatacattcaggc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttgatgtcctcttctggcttccataagccctgaacacatgtgctacacatacattcaggc 617
Query: 419 acacatgtacatagaaagaaagaaagaaagaaagaaagaaaga 461
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 acacatgtacatagaaagaaagaaagaaagaaagaaagaaaga 660
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 878
Length adjustment: 10
Effective length of query: 469
Effective length of database: 868
Effective search space: 407092
Effective search space used: 407092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
