BAC Information

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BAC

Clone NameMSMg01-141I18
Chromosome3 (Build37)
Map Location 135,336,979 - 135,337,245
singlet/doubletsinglet
Overlap geneNfkb1
Upstream geneLOC100039234, Tacr3, LOC229837, LOC100039290, EG620439, Cenpe, Bdh2, C80638, 4933425K02Rik, Zcd2, Ube2d3, Manba, LOC668745
Downstream geneENSMUSG00000045520, Slc39a8, LOC100039350, LOC383923, Bank1, LOC100039477, LOC668868, Ppp3ca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141I18.T7 (MSMg01no141_i18.b1)MSMg01-141I18.TJ (MSMg01no141_i18.g1)
ACCAG346391AG346392
length1,2451,305
length of high quality
(start - end)
269 (140 - 408)324 (88 - 411)
definitionCHROMAT_FILE: MSMg01no141_i18.b1 PHD_FILE: MSMg01no141_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:04 2005CHROMAT_FILE: MSMg01no141_i18.g1 PHD_FILE: MSMg01no141_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTTTCTTTTTNNNGCACTGCGCGCTAAGACTCCTAAGGGAGAGGATCC
GCGGAATTCTCCACACTTGAGGCGTCCCTTTAAATTCGTGCATGCCAACA
CACGAAGTAGCATGCTGCCCTTAAGACTGGTGCGGCCACAGGCTCCCTCT
ATATTCCCTGAGCGCTCTTTAGCCTTCATGCACACACCGTCCAGTCAAAT
TGCTTTGTCTCCACTGGGGAGATGCACATTAGGAGTCTCAGCATGTTTCT
GTCGTTTCTGCAACATGCCTTCTCCCGAGTGTGCTTTCTGTTCCTACATC
TAGTACCTGGTGAGCCCATAGAACTCTTCTACAGAGTGTAACCCAGAGAA
CAGAATAGGGCCTTACAGTGCATGAATTTCAGATGAGCTACTTACAAGGC
AATCCAAACTTTTTTGGAGAGAGAGAAAGAGAGAGAGAGAGAGGAAGAGA
GAGAGAACATCTCACAAAGCCACAGTTAGCTAAACTAAAAATTAAAACAT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTNTTNTTTTTTTT
TTTTNTTCTTTTTTTTTTTTTTTCTTNTTTTTTTAATTTTTTTTTTTTTT
TTTTCCTATTTTTTTCTCCTCTCCCTTTTCTTCTTTATTTTTTCTCTTAC
TTCTCATTTTTCCCCTTCTTTTCTCCCCTTCTTCTATCTCTTTCCTTTAT
TTTTATTCCTTCCTTTTTATCCCTTTCTTCTTATCTTTTCCTTTTCTTCT
TTCCTTTTCAATTTTTTTCTTCCTCTTTTAACCCTTTCATTTTTTTTTTT
TTTTTTTTTTTCTCCTCTTCTCTTTAATTTCTTCATTTTTTTTTCTTTTC
CCTCTTTTTTAATTCTTCCCTTATATTCTCTTTTTCTTTTTTTATCTTTC
TTCTCTTTCTTTCCCTTATCCCATCTCTTTTTTTTTTTTTTTTTTCTTTC
TTTTTCTACATCCTCTATCCTTATCTTCTTCATCTTCTCTTTTCTCTTTT
TACTCCTTTTTTCATTTCTTTCTTTCCTTATTTTTCTCTTTTTCTCTTTT
TTTTTTTTTTTTTAATTTCTCTTTTTTTTCTCTTTCTTTCTTTTTTTTTT
CTTTTTTCTTTGTCTCCTTTTTCTCTTCTTATCTTCTTACTTTTCTTTCC
TTATATACTTCTTCCTCTCTCTCTTTATCTCTATCATTTTCTTTTTCTTT
TCTCTTTATTCCTTTTTTCTATTTCTCCTCTCATCTATCTTTTCT
NCCTTTTTTTTTTTTTAGATTGGNAGNCGCGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTTTAAGTTGAATCCTTCTCA
ACAGTCTGTTTTACGGGAACCCTTCATTACCACCGTTCCCCAGCTGAAGA
GTTCTGAATTCACGCAGTTGAATCCTTCTCAACAGTCTGTTTTACGGGAA
CACTTCATTACCATGACCCGCAGTTCTGGTTCCGGAATGAGGGATCTTCC
TTGTGCCGGTGATGGTAACCGTCCCGGGTTTTCTTATCCCGGGTTTTCTC
GTCTCGGGTTTCAGCACCAACTCTTACACGCGTTCACGCGATCGGCCAGG
AAGAACACAACAAACCGGAATCTTCTGCGGCAAAGCTTTATTGCTTACAT
CTTCAGGAGTTTTTTTTTAAGAGAGAGAACAAGAGCGCAAGAGCGCAAGA
GCAAACGCCAGAGAGCAAGAGCTTTATTGCTTACATCTTCAGGAGCAAGA
AGCAAGAGCCAGAGCAAGAGAGAGAATGGTGAAACCCCGTCCCTTTTAAG
GAGAATTATCCTCCGCCTAGGACGTGCCACTCCCTGATTGGCTGTAGTCC
ATCGTTCGAGTTGTCGTCTCGGTTAATGTATATTAATTGTTTTGCTAATT
TATCTTTTGTTTCTTTTTTATATTATTTTGTTTATTATTTACTACTTTTT
ATTTTTTTTGCTTTTCTTTGATCTTTTTTATTGTCTCTTTATTTTTTCTT
TATAATTTTTTATATTTATTTCTTTATTTTATTCTTTCTCTATTATTTTT
TTTTTTTTCTTCGTTTTACTATTTCTATTTTTTCTCCTTCTTTTTTCTTC
TTTTTTGCCTCTTTTCTTTTTTTTTTTTTTTCTTTTTTTTTTACTTTATT
TTTTTTTTTTTTTTTCTCTTTTTTTTAATTCATCTCTTTTTCTTATTCTT
TTATATTCTTCTTTTCCTTCTTTCTCTTTTTTTTATCTTTTATCCTTTAT
TCTTTTTATTACTTAATATTTTATTTTTTTTTTATTATATTCTTCTTTTT
TTTATTTTCTTTCTTTTTTTTCTTTTTTCTTCATTTTTTTTACAATTCGC
ATATTTTTATTTTTTATTCTTTTTATTTTTTCTTTTTTTTTCTTTAATTA
TTTCTCTTTTTTATTTTTTTTTCTTTCTTATTTTTTCTCTTTTATATTTT
ATAATTTATCTTTATTATTATTATTTCTTATCTTTTTTTTCTCTCTTATT
CTTTTTATTCTTTCACTCTTTTTCTATTATTTTCTCTTATACTTCTTTTG
TTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_i18.b1 MSMg01no141_i18.b1 CHROMAT_FILE:
MSMg01no141_i18.b1 PHD_FILE: MSMg01no141_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:04 2005
         (269 letters)



>mm_chr3_135336779_135337445
          Length = 667

 Score =  472 bits (244), Expect = e-137
 Identities = 263/270 (97%), Gaps = 4/270 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggctccctctatattccctgagcgctctttagccttcatgcacacaccgtccagtcaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 aggctccctctatattccctgagcgctctttagccttcatgcacacactgtccagtcaaa 260

                                                                       
Query: 61  ttgct-ttgtctccactggggagatgcacattaggagtctcagcatgtttctgtcgtttc 119
           ||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 ttg-tgttgtctccactggggagatgcacattaggagtctcagcatgtttctctcgtttc 319

                                                                       
Query: 120 tgcaacatgccttctcccgagtgtgctttctgttcctacatctagtacctggtgagccca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgcaacatgccttctcccgagtgtgctttctgttcctacatctagtacctggtgagccca 379

                                                                       
Query: 180 tagaactcttctacagagtgtaacccagagaacagaatagggccttacagtgcatgaatt 239
           ||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 380 tagaactcttctacag--tgtaacccagagaacagaataggaccttacagtgcatgaatt 437

                                         
Query: 240 tcagatgagctacttacaaggcaatccaaa 269
           ||||||||||||||||||||||||||||||
Sbjct: 438 tcagatgagctacttacaaggcaatccaaa 467


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 667
Length adjustment: 9
Effective length of query: 260
Effective length of database: 658
Effective search space:   171080
Effective search space used:   171080
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)