BAC Information

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BAC

Clone NameMSMg01-141L02
Chromosome3 (Build37)
Map Location 78,714,626 - 78,715,262
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626461, LOC667526, LOC626479, LOC100041691, LOC383883
Downstream geneLOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141L02.T7 (MSMg01no141_l02.b1)MSMg01-141L02.TJ (MSMg01no141_l02.g1)
ACCAG346501AG346502
length1,2261,197
length of high quality
(start - end)
687 (131 - 817)635 (127 - 761)
definitionCHROMAT_FILE: MSMg01no141_l02.b1 PHD_FILE: MSMg01no141_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:23 2005CHROMAT_FILE: MSMg01no141_l02.g1 PHD_FILE: MSMg01no141_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTACCCTTTNNNTTGACACTGGGCGCTNXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCACCTGAGGAATACCACAATAAAGACCCCCACCTGAA
AAAATGTTCAACATCCTTAACCTTCAAGGAAATGCAAATCCCAACAACAC
TGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAACTCAGGT
GACAGCAGATGCTGGCCAGCATGTGGAGAAAGAGGAACACTCCTCCATTG
TTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGT
TCCTCAGAAAATTGGACATAGTACTACTGGAGGATCCAGCAATACCTCTC
CTGGGCATATATCGAGAAGATGTCCCAACCGGTAAGAAGAACACATGCTC
CACTATGTTCATAGCATCCTTGTTTATAATAGCCAGAAGCTGGAAAGAAC
CCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTAC
ACAATGGAATACTACTCAGCTATTAAAAAAATGAATTTATGAAATTCCTA
GGCAAATGGATGGACCTGGAGCATATCATCCTGAGTGAAGTAACCCAATC
ACAAAGGAACTCGCACAATATGTACTCACTGATAAGTGGATAATAGCCCA
GAAACTTAGGATACCCAAGATATAAGATACAACTTGCCAAATGCATGAAA
TTCAAGAAGAATGAAGACCAAAGTGTGGACACTTTACTCTTTCTTAGAAA
TGGGAACAAAACACCCATAGAAGGAGTTACAGAGACAAAATTTGGAGCTG
TGATGAAAGGATGGACCATCTAGTGATTGCCATATGCAGGGATCCATCCC
ATAATCAGCTCCCAATGCTGACCCCCTTGCATACCCTAGCAAGAATTTTG
CTGAAAGGACCCCAGGTATAGCTTCTCTCTTGTGAAGATTATGCAAGGGG
CCCTAACAAACCCCGAAGGTGGATGAATCCCCGGCCCGCCTTTTGGAGGG
GTCCAAACGGCCCCCTAAGGGAGGGAATTAGAAAAAATTTCCCCCAGGGA
GCTTGGCACCCCTATAGGTGGGAACCACCAATAATGAACCTAACCCGTTA
CCCCGGGAAGCCTCCTTGCCCTTTTACCGTGCCATTGGGTATCTCAAAAG
AAGGGCCCAAATGGGCGCCCTTCCCTTGGGAAAGAAAAAGGCCCCACTTG
TGAACCTGCCCCACACCTTTTAATGA
CCTTCTTTTTTTAACCAGTGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCTTTATAAGCCCCCAGGCTGGCCATG
GACTTGAAATCCATCCTGAGCCTTATACCTAAGCGCTGAGATCACTGGTG
TGATACCTAGCACTTAGCTTGTTTTTCTGCCCTCTTTCTCTGCTATGTAA
TGCCATATAGTTTATCCACATTGCTGTAAATAACAGAAAAGATTTCATCC
TTTTTGATGCCAAAGTGATACTCCTTTGTGCACGTACCACATTAAAATAT
TCTTCATAGAGTCTTCTCCTGGTCCTTAGCCAAGGCCTATGTAACTTATT
GAATGGACAACATCTTCCCCATCATTGCCTGTGTTGAGGTTGCTCTCATT
TTGCTATCCTCTGAGCATATCTTTATGTGATCAGTGAGCTAGTGTGATCA
GTGTGCTATGGTTTGAATGTCCTCTCCAAAGTTCATGTTGAAATCTGAAT
GACACTTTTGAGATATGCACACTTGCTCTCAGGAGTGGCTTAATGCTATT
ATTATGGGATTGTATTGACTCTCACAGGAATGATGTGTTGTATAAAGTGA
CTACTTTTGCCATGTCATGCCCTTCACCATGCTTTGGCTCAGTAACTAGG
CCCTGACCAGACAAGCAGTCTACCGATCCTGGACAATCCAGACTTGAGAA
TGATAAGAGGTAGAACTCTTTGTAAATTACCTCCTATGTGGCATTCCATT
ACAGACGTGGACAGCAGGTGAAGCAGAGAAGTCCCCCATAGGTTTGTCAT
GGTTCAAAGCCTGCCCAAAGGCCCCTTTTTTTCTATCCTCCACCTTAGAC
TCTGCAGCCCCAGATGCTGATGCCTACAAAAAACTGGATTGCCCTCTATG
AATTTCCCCTTTAAGGAAGAAGTGCTGCCAGCTTAAAAAAAATGTCCATT
TCGTTGACGGGTAAAAAATTTTGTGCGTCTGTTTTGTGTTCTTTCTTCTT
TCTCTATAATTCTGCTTTCCCCATTTATTATACTCTTAATTCCCTGTTTC
TTGTTCTCTCTGTCTCTCCCCTTACACTTTTTTTCTTCTTACCCTTCCTT
CCCCTCTTTCCCTCACTTTTCCCTTCTCCTCGTATAATTTTACCTTTCTT
GATTACCTTTTTACTACTTCTATCTCCTTCTATCATTCTTTCTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_l02.g1 MSMg01no141_l02.g1 CHROMAT_FILE:
MSMg01no141_l02.g1 PHD_FILE: MSMg01no141_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:23 2005
         (635 letters)



>mm_chr3_78714543_78715577
          Length = 1035

 Score = 1102 bits (570), Expect = 0.0
 Identities = 620/638 (97%), Gaps = 4/638 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctaagcgctgagatcactggtgtgatacctagcacttagcttgtttttctgccctctt 60
           ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 acctaagtgctgagatcgctggtgtgatacctagcacttagcttgtttttctgccctctt 661

                                                                       
Query: 61  tctctgctatgtaatgccatatagtttatccacattgctgtaaataacagaaaagatttc 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tctgtgctatgtaatgccatatagtttatccacattgctgtaaataacagaaaagatttc 601

                                                                       
Query: 121 atcctttttgatgccaaagtgatactcctttgtgcacgtaccacattaaaatattcttca 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 600 atcctttttgatgccaaagtgatactcctttgtgcacataccacattaaaatattcttca 541

                                                                       
Query: 181 tagag---tcttctcctggtccttagccaaggcctatgtaacttattgaatggacaacat 237
           |||||   ||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 540 tagagtcttcttctcctggtccttagccacggcctatgtaacttattggatggacaacat 481

                                                                       
Query: 238 cttccccatcattgcctgtgttgaggttgctctcattttgctatcctctgagcatatctt 297
           |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 480 cttccccatcattgcctgtgttgaggttgctctcattttgttagcctctgagcatatctt 421

                                                                       
Query: 298 tatgtgatcagtgagctagtgtgatcagtgtgctatggtttgaatgtcctctccaaagtt 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tatgtgatcagtgagctagtgtgatcagtgtgctatggtttgaatgtcctctccaaagtt 361

                                                                       
Query: 358 catgttgaaatctgaatgacacttttgagatatgcacacttgctctcaggagtggcttaa 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 catgttgaaatctgaatgacacttttgagatatgcacacttgctctcaggagtggcttaa 301

                                                                       
Query: 418 tgctattattatgggattgtattgactctcacaggaatgatgtgttgtataaagtgacta 477
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 300 tgctattattatgggattgtattgactctcacaggagtgatgtgttgtataaagtgacta 241

                                                                       
Query: 478 cttttgccatgtcatgcccttcaccatgctttggctcagtaactaggccctgaccagaca 537
           |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 240 cttttgccatgtcatgccctccaccatgctttggttcagtaactaggccctgaccagaca 181

                                                                       
Query: 538 agcagtctaccgatcctggacaatccagacttgagaatgataagaggtagaactctttgt 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 agcagtctaccgatcctggacaatccagacttgagaatgataagaggtagaactctttgt 121

                                                 
Query: 598 aaattacctcctatgtggcattccattacagacgtgga 635
           |||||||| ||| ||||||||||||| ||||| |||||
Sbjct: 120 aaattaccccctgtgtggcattccat-acagatgtgga 84


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)