Query= MSMg01no141_p22.b1 MSMg01no141_p22.b1 CHROMAT_FILE:
MSMg01no141_p22.b1 PHD_FILE: MSMg01no141_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:04 2005
(730 letters)
>mm_chr3_60809577_60810706
Length = 1130
Score = 1367 bits (707), Expect = 0.0
Identities = 724/730 (99%)
Strand = Plus / Plus
Query: 1 taataaagagaaagcagcgttttctactctacatagtaatgaaatatttacaaagtttat 60
||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||
Sbjct: 201 taataaagagaaagcagcgttttctactctagacagtaatgaaatatttataaagtttat 260
Query: 61 tgcattttaacaacaatttccaatgaataatgaattgctacatttaaagcccttgaaatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcattttaacaacaatttccaatgaataatgaattgctacatttaaagcccttgaaatg 320
Query: 121 gtcaaatttaatttaattaaaataatgaggaattaaatagtgcaaatgaacaaatctgat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcaaatttaatttaattaaaataatgaggaattaaatagtgcaaatgaacaaatctgat 380
Query: 181 atccaaggtattctagcagtggaagtgagccctcccacagctacctcctgagtttgtaag 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 atccaaggtattctagcagtggaagtgagtcctcccacagctacctcctgagtttgtaag 440
Query: 241 tgatggcagacactgtttttaaagtactctctgagaaaacaacctttgtgcccagtagga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatggcagacactgtttttaaagtactctctgagaaaacaacctttgtgcccagtagga 500
Query: 301 tatatgacagaagattcagatttgatgtcatttcttaaacattcaaatgactggagatct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatatgacagaagattcagatttgatgtcatttcttaaacattcaaatgactggagatct 560
Query: 361 gggagaattttggagtgcttccatttgcctaatgtcttattactcaggtccatgaagaaa 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggagatttttggagtgcttccatttgcctaatgtcttattactcaggtccatgaagaaa 620
Query: 421 agctatctttagccttcctatatagtggttcatctacacattcagtcctaacataaagag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agctatctttagccttcctatatagtggttcatctacacattcagtcctaacataaagag 680
Query: 481 ctaaagaagcccactagagaagacatttactgtgtctccgtcttttgagattttcagagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctaaagaagcccactagagaagacatttactgtgtctccgtcttttgagattttcagagt 740
Query: 541 tctcaagtggtaagactcatgcaacattttctgtttcagaatcctacagacaaaatctac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tctcaagtggtaagactcatgcaacattttctgtttcagaatcctacagacaaaatctac 800
Query: 601 aatacacccttattattgttgacactttaaatatgttcagtggctcanaaataattttct 660
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 801 aatacacccttattattgttgacactttaaatatgttcagtggctcaaaaataattttct 860
Query: 661 taaactgacccaaatggaaatttcagaaacccacagctcagcactccatatgcctgtatc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 taaactgacccaaatggaaatttcagaaacccacagctcagcactccatatgcctgtatc 920
Query: 721 gtttcctcag 730
||||||||||
Sbjct: 921 gtttcctcag 930
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 730
Length of database: 1130
Length adjustment: 10
Effective length of query: 720
Effective length of database: 1120
Effective search space: 806400
Effective search space used: 806400
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no141_p22.g1 MSMg01no141_p22.g1 CHROMAT_FILE:
MSMg01no141_p22.g1 PHD_FILE: MSMg01no141_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:04 2005
(774 letters)
>mm_chr3_60877131_60878304
Length = 1174
Score = 1365 bits (706), Expect = 0.0
Identities = 733/742 (98%), Gaps = 2/742 (0%)
Strand = Plus / Minus
Query: 34 cagacagctcgttgaaaatgcagagtacccgggcagtggtggcgcacgcctttaatccca 93
||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1174 cagacagcttggtgaaaatgcagagtagccgggcagtggtggcgcacgcctttaatccca 1115
Query: 94 gcacttaggaggcagaggcaggcagatctctgagtccgaggccagcctggtctgcacagt 153
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1114 gcacttaggaggcagaggcaggcggatctctgagtccgaggccagcctggtctgcacagt 1055
Query: 154 gagttccaggacagccagggctacacagagaaaccctgtctcaaaaaaaac-aaaaacaa 212
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1054 gagttccaggacagccagggctacacagagaaaccctgtctcaaaaaaaacaaaaaacaa 995
Query: 213 acaaacaaacaaacaaaaaaaaggaaaggaaagaaagaaaatgcagagtgtaagtctgaa 272
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994 acaaacaaacaaa-aaaaaaaaggaaaggaaagaaagaaaatgcagagtgtaagtctgaa 936
Query: 273 gccacatttcattgatatttcacaggatttaagatgttcctggcagcctctgttcctggt 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 gccacatttcattgatatttcacaggatttaagatgttcctggcagcctctgttcctggt 876
Query: 333 gccctgttattgtgccatagcaaagcttgaagcagaagtcaggcaggagcgcagtatagc 392
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 875 gccctgttattgtgccatagcaaagcttgaagcagaagtcaggcaggagtgcagtatagc 816
Query: 393 gtggacctggggaggaactggccagaggccatgaaagtagctggtgagttttagaggaag 452
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 815 gtggacctggggaggaactggccagaggccatgaaagtagctggtgaattttagaggaag 756
Query: 453 ctcaaagccaagtcaaaccatggcctaagtgacctccacttggtagacactgttaaacaa 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 ctcaaagccaagtcaaaccatggcctaagtgacctccacttggtagacactgttaaacaa 696
Query: 513 gagcggagcatgctccaagctctttgtaactgatctacgatggtttatttattgatggtt 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gagcggagcatgctccaagctctttgtaactgatctacgatggtttatttattgatggtt 636
Query: 573 tgtgagtctggaaacattctaaaccggaagtgcccatgggacagagcctcagaaaggaat 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tgtgagtctggaaacattctaaaccggaagtgcccatgggacagagcctcagaaaggaat 576
Query: 633 cctgactgaggcgttgaatctcctttcttgctcattcttgctctctccctccctttctat 692
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 575 cctgactgaggcgttgaatctcctttcttgctcattcttgctctcttcctccctttctat 516
Query: 693 cttctattctcctactactacgagcttcaagttttgtctggaggtaacatacctttcatc 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 cttctattctcctactactacgagcttcaagttttgtctggaggtaacatacctttcatc 456
Query: 753 ttcttcaaagaagtcacgtatc 774
||||||||||||||||||||||
Sbjct: 455 ttcttcaaagaagtcacgtatc 434
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 774
Length of database: 1174
Length adjustment: 10
Effective length of query: 764
Effective length of database: 1164
Effective search space: 889296
Effective search space used: 889296
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
