BAC Information

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BAC

Clone NameMSMg01-142D11
Chromosome3 (Build37)
Map Location 108,959,103 - 108,959,792
singlet/doubletsinglet
Overlap geneSlc25a24
Upstream geneAmigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5, Sort1, Mybphl, Psrc1, Celsr2, Sars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik
Downstream geneVav3, Ntng1, LOC100043181
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-142D11.T7 (MSMg01no142_d11.b1)MSMg01-142D11.TJ (MSMg01no142_d11.g1)
ACCAG346884AG346885
length1,2311,246
length of high quality
(start - end)
645 (139 - 783)692 (89 - 780)
definitionCHROMAT_FILE: MSMg01no142_d11.b1 PHD_FILE: MSMg01no142_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:01:36 2005CHROMAT_FILE: MSMg01no142_d11.g1 PHD_FILE: MSMg01no142_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:01:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAACCCTNNNNNCCACATTGCGCGCTATAGACTACTATAGGGAGAGGATC
CGCGGAATTCTCCTGAAGAATTCGGCCTCTTAAAGACCCCTGGGAGATAT
GGCTCAGTCAGGAAAGCCTTTGCTGTGCACACATGACCACCTCAATCTGG
GGTCCCAGAACTCGTGTAAAAACTAGGCATGGTGGTGTGTGTGTTCTTCA
CAGCACTGGGGAAGAAGTGATGGGAAGACTCCCAGGGCTCCCTGTCCAGT
CAGTCTAGCCAATCAGTGAGCCTGGTTTCCACAGTGAGTTCCAGGCCAGC
CAGAGCAGCACAGTGAGACCTTGTCTCCAAAATCAAAACAAACAAGATAA
TAAGAGTGAGAGAACCTGGGGCTCTAGAGTTGGCTCAGTGGTTAAGAACA
CTTGTTGCCCTTGCAGAGGACCCGAGTTCGATTCTCAGCACCCACATGGT
AGTTCACAACCATCTGATTAAGGGGATCTGGTGCCCCATTTTGACCTCTG
TGGTACCAGGCACACCCAGGGTACATGTACATACATGGAGACCATACACT
CATACATGTAAAATAAATCTAAAAATCTACCCTTTACAAACAACCCTGGA
ATCTCATTTACAAAAGAAGTTTCTTTAAGATAAGAGAGGCTGTTAATTCA
GCCAGTAAGCAGCACCCCTCCATGGCCTCTCCATCAGCTCCTGTTTCCAG
CTTCCTGCCCTGCTAGAGTTCCTGCCCTCACTTCTTCAACAATGAATGAA
GTGTACATTAAACAAACCATTTCCTCCCCGAGTTGCTTTGGCCATGGTGT
TTCATGACAGCAATTACTAACCCTAAGACATCTAGAGGTCATGGTCTGTG
CTTAATCCAAAGCGGATAAGTACAGCCTTCTACGTTACCTTGGGGTCAAG
GGAAGCCCCACTCCTGAACATAGCAGCGAAAGCTGCTTTCCATGCCTTCG
TTTTCTACTGAAAAGGTTGTTCCTAATGAAACTGCTTGAACTAAATGGGT
AAAGACAAAGGACTGCTTTCTTTTTTAAACAATTAAAAAAAAAAAACTTT
TCTTTTTTTAGGTAAGGAAATTTTTACCCCTGGTTTCATTTCTTAATATA
AAAAACCCCCTTCTCCTTTTATTTGTAAGAAACCCTTTTAAAAGTTTTTC
CCTGTAATTTCTTCCTGTCCTCCCTTTTTCTTTAAAGTCCCATTTTGTTA
ATAAAGTTCGCTTAAATATCGTTTAACAACA
CATTCCTTTNNNNACACATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAGGGAATAGTTAAACTAT
CCCCTATGTCAATTCCCCGCTGGAATGGAAAGAGATCCCACAGTTCTTCA
GTCGCAAACAGATAAGCCCAGAACTTTCTTTTTGTGTCGGAGCTGTTACT
GTTAGGAGCGAGCCCACATAATTGTTTTTGCAACTTAATTATTTAAATGC
TGTGGTGGGTATAAGTAGGTCACAGAGCACTTTCCTAACATGTTCCAGAT
CCTAGCACCACACACATAAAATGATCTTGGCATAAACTTTATGGGCAAGA
ATGAAAGGTAATAAACCAAGCTGGTAGTAACTCTCTCTTCTTCCATTTGT
TCCCAATAATTTGAATTTATGATTATAACATCAAATGTTAACAACTATCC
CCAAAGATATAATACAAAGTTCACAGTATAAAATGTTTAGTCATAATTGA
TTTTATGATGTTCTGTGTAAACGTAGACATTGTTACTGGTGACAGTGTGA
ACCCTCAAAGTATTGAGCGGGAGTCAAAGACACTTCCCTCCAAGTATAGA
AGACAAATCCACAGGTTGAGAGGTGGGAGAGCCTGCAAAAGGTCCCCAAG
GGCTTCAAGAAACAGACTGTGTGACAAACCTAATTTATACCAATATATTT
TTGCCAGAATGCTAATGAAAGAATCCCAATAAAAAATTTGTGAAGTATAA
ACTGGCAGGAAATGCCAACCACCTGAGTCCAAGTTATTCCCTAGCATTCA
GTGAGTAATGCAATACCTTATGTCGGCAATAAGTCAAGGCAGCCTTAATA
AGCAAAGGTTCAGGGACCCGAGGCCATAACATCTTTAGCTATCTGGATGC
ACAGGAATGACTTTGGTAATGTGTGTCCTCGGACTACCAAACTTCCCATA
GCAAAACCAGCCCATGCTAATGATAGCCTGACAGCTTGTTTCATCACAAA
GGAACTTCCTCCCAGTTTTGAAAAAAGCTGATTTTTAACAACCCTTGGGG
TGGGGGGGGGAGACTTTTAAAGAAATTTCTAATAACCCGGGGCCCAACAG
AAATAAACCGAAACTGTTAAAAATCTCAAAATATCCCCGGGAACTCTCTC
TGAAAATTTGGTGCCACCCCTCCCCCACGAGGGTTTGTAAGATCCTCGTG
GGGGCGAACATAATGGTGTAACCACAACTCCTCCTTTTAATTATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no142_d11.g1 MSMg01no142_d11.g1 CHROMAT_FILE:
MSMg01no142_d11.g1 PHD_FILE: MSMg01no142_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:36 2005
         (692 letters)



>mm_chr3_108958903_108959993
          Length = 1091

 Score = 1170 bits (605), Expect = 0.0
 Identities = 671/693 (96%), Gaps = 5/693 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagttaaactatcccctatgtcaattccccgctggaatggaaagagatcccacagttctt 60
           ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 890 tagttaaactatcccctatgtcaattccctggtggaatggaaagagatcccacagttctt 831

                                                                       
Query: 61  cagtcgcaaacagataagcccagaactttctttttgtgtcggagctgttactgttaggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 cagtcgcaaacagataagcccagaactttctttttgtgtcggagctgttactgttaggag 771

                                                                       
Query: 121 cgagcccacataattgtttttgcaacttaattatttaaatgctgtggtgggtataagtag 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 770 cgagcccacataattgtttttgcaacttaattatttaaatgctgtggtgggtataactag 711

                                                                       
Query: 181 gtcacagagcactttcctaacatgttccagatcctagcaccacacacataaaatgatctt 240
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 710 gtcacagagcactttcctaacatgttccagatcctagcaccacacatataaaatgacctt 651

                                                                       
Query: 241 ggcataaactttatgggcaagaatgaaaggtaataaaccaagctggtagtaactctctct 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gtcataaactttatgggcaagaatgaaaggtaataaaccaagctggtagtaactctctct 591

                                                                       
Query: 301 tcttccatttgttcccaataatttgaatttatgattataacatcaaatgttaacaactat 360
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 590 tcttccatttgttcccaataaaatgaatttatgattataacatcaaatgttaacaactat 531

                                                                       
Query: 361 ccccaaagatataatacaaagttcacagtataaaatgtttagtcataattgattttatga 420
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 530 ccccaaagatataatacaaagttcacagtataaaatgtatagtcataattgattttatga 471

                                                                       
Query: 421 tgttctgtgtaaacgtagacattgttactggtgacagtgtgaaccctcaaagtattgagc 480
           |||||||||||||||||||||||||||||||||||||||||||| |||| |||||| || 
Sbjct: 470 tgttctgtgtaaacgtagacattgttactggtgacagtgtgaactctcagagtattaagt 411

                                                                       
Query: 481 gggagtcaaagacacttccctccaagtatagaag-acaaatccacaggttgagaggtggg 539
           ||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||
Sbjct: 410 gggagtcaaagacacttccctccaagtatag-agaacaaatccacaggttgaggggtggg 352

                                                                       
Query: 540 agagcctgcaaaaggtccccaag-ggcttcaagaaacagactgtgtgacaaacctaattt 598
           |||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 351 agagcctgcagaaggtcccc-agaggcttcaagaaacagactgtgtgacaaacctaattt 293

                                                                       
Query: 599 ataccaatatatttttgccagaatgctaatgaaagaatcccaataaaaaatttgtgaagt 658
           ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 292 ataccaatata-ttttgccagaatgctaatgaaagaatcacaataaaaaatttgtgaagt 234

                                            
Query: 659 ataaactggcaggaaatgccaaccacctgagtc 691
           |||||||||||||||||||||||||| ||||||
Sbjct: 233 ataaactggcaggaaatgccaaccacatgagtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1091
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1081
Effective search space:   737242
Effective search space used:   737242
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)