CCGTTCTNNNNNNGAGCAGTGGGCGCTATAGACTCCTATAGGGAGAGGAT
CCGCGGAATTCTTGGAGGGAAACCAGCCCTTTTAGGCCCACAACATTTGA
GATATAAATGATAAATGGCCTTTCACACACCCACACACACCCACACACAC
ACACACACACACACACACACACACCACATAATGCAGGGAAGGAGGTCAGT
ATCAAAAAAGAAAGTGCAAATGTAAAAGAAAGGTGCCCCAGGGTAGTAGA
TCTTCCCTGAAAGGTGAGGGCAGGTAAAGAAAATAGAAATTGTGATGGTA
GCCAGAAAGTTATGGCTCCTGGAAAAAAAAATAGGAAGGCACCAATTTGT
GTAATAGGAATTGTGATGGAGATATCAATTAGCAATTAACAAAGCACATT
TTTTATTGATTTCCTTAAATAAATTCATCCAGTGTGATGGTTTGTATATA
CTTGGCCCAGAAAATGGCACTATTAGGAGGCGTGCCCTTGTTGGAGTAGA
TGTGTCACTGTGGGTGTGGGCTTTAAGTCCTTCATCCTAGCTGTCTGGAA
GCTAGTCTTTTCTGAGCAGCCTTCAGATGAAGATGTAGAACTCTACATCC
TACCATGACTGTCAGAATGCTGCCATGCTCCCACCTTGATGATAATGAAC
TGAACCTCTGAATCTGTAAGCCAGCCCCAATTAAATGTTGTCCTTCTAAG
AAAAAAATAGTTTCCCAGTCTGGGTTGAAAGCTCAGTGTATGAAAGTGTT
AAATGTGAAAGTATACGGATCTAGCGTGGATTCCTATCATCCAATGTAAA
AAGCTGGACATGGCTGTGTGCCCCTACCAAACAAGTGTTGTGAATGACAG
ATAAAGGAAAATTTCTGCCCTTGCTCTGCTGAAGTAACCCATCTAAAAGG
AATATGACTGATAATGATATAACAGGATACTTGCCCCATTNTTCTGGTCT
AAACCCCCAAACTTGGAACATATGTTTGCATTTCCCCTCCCTTTACTGTG
TTATACCCTCTCCTCCCCCTATTACCCTTCCCTTATATACCCATACCGGT
CCATTTAACTCTATTCCTCCTAAAATATCTCCTCATTTTCTATCCCCACT
CTCTACTATACCCTCTTTTGTCTTATATTTGTCCAGTTTTGAACTCTTTA
TCCTTATAATTCCTATGTTATTCCAAATATTTATTCTCTCCTCCTCCCCA
TAAAATTTCAATAATCTCTCTCTTATTTCTCTTCTAAATAGTCGCTCTCC
TCCTCCCATGGT

NNNCCTATCATGGNAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCTCTTTACCTCTATTGCTTTCTCTGAGTACCA
ACTGAGCCCTTTATTTCACATGGGGTTACTACTAACTGGAAATACCTGGA
GTTCTAGCTCCCTATAAAATATGCTGGTCTGACAAAACTATAAGACTAAG
TATGAAACACAAAAACAAAAGTTTCTTTCTTCTTTTCTTTCTTAGCTTTT
ATCAAGGTATAAGGGAGAAGAGAACTAATTCATTTTCATCCTAGTTAATA
ACTTCAAATAACTGAAGGTAATTAAAAAGCTGAACAACTCTCTTTATTAA
AGACCAAGTATGATAAAACATAAATCTTTAATTAGAGTATTTTTTATTTA
TTATAAAAGTTCATAGAAATTAGTTACTCATTAATGGAGCCCTCGGTTTT
AAGAAATTATAAAAGATTATATTTTATCATTTAACATTTTTCACGAATAA
CAAAGCATTAACATTTTTAAAGTGTTATCATACTTATGCATTTATTAATC
TACTTAGAGCACACATACCTAAATTATTCTAAAAGTAAAACAGAATTTAA
AAATTAAATATGTTCTAAATATTCATTAAAAGTCTCAACATATAATGGAT
GATAAATTGTCTTATTCACACAATTATCTCTTTAATTAAGAGACCTAAAA
TTTTAAATAATCTTTCAATCATCTGTATTTTCTATGCTATGATTGGGATT
GATTACAGAGGCAGAGAGTCAGACCGAGATAGTGATAGAGACCGATATAT
AGAGATGCCGAGACAAAGATAGTGAGACTGTCATTAATGAAGTATAATAT
GGAGCCACATATCAAAAGTTATTAATATAGTTTATCTAACCTAAAAATTA
CCCTCTATTATGAAATGCCTTCTGGGTAAAAACCTTATCTCCACGATTAT
TGTGTCCCGGCCAGTTGTTAATGACCAGGGATCTTCCTATCCATTTCAAA
AATGTGTACAAAAATCCTTTAAAAGACTCCCTTGGCATTGGTTTACCCAA
TACCCCACTATGGAAGAAAAGTGGGTATTCCAAGAACCCGGGTAAAATGG
TTGTTGCCTTTATAAAATCCTTTGCCCCGGGAACGGGTAAATTTTTTTAT
TCCTTTTTTTTTAAAAATTTTTTTTTTTATAATAATAAAAATATCCCCCC
AGGACTTATCTCCCGGCGCATCTCCACAAGTTCCACAATATTAATT

Query= MSMg01no142_j17.b1 MSMg01no142_j17.b1 CHROMAT_FILE:
MSMg01no142_j17.b1 PHD_FILE: MSMg01no142_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:30 2005
         (561 letters)



>mm_chr3_78042032_78042992
          Length = 961

 Score =  965 bits (499), Expect = 0.0
 Identities = 529/539 (98%)
 Strand = Plus / Minus

                                                                       
Query: 6   acacccacacacacacacacacacacacacacacacaccacataatgcagggaaggaggt 65
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 acacacacacacacacacacacacacacacacacacaccacataatgcagggaaggaggt 480

                                                                       
Query: 66  cagtatcaaaaaagaaagtgcaaatgtaaaagaaaggtgccccagggtagtagatcttcc 125
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 479 cagtatcaaaaaagaaagtgcaaatataaaagaaaggtgccccagggtagtagatcttcc 420

                                                                       
Query: 126 ctgaaaggtgagggcaggtaaagaaaatagaaattgtgatggtagccagaaagttatggc 185
           |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 419 ctgaaaggtgagtgcaggtaaagaaaatagaagttgtgatggtagccagaaagttatggc 360

                                                                       
Query: 186 tcctggaaaaaaaaataggaaggcaccaatttgtgtaataggaattgtgatggagatatc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tcctggaaaaaaaaataggaaggcaccaatttgtgtaataggaattgtgatggagatatc 300

                                                                       
Query: 246 aattagcaattaacaaagcacattttttattgatttccttaaataaattcatccagtgtg 305
           ||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 299 aattaacaattaacaaagcacattttttattgatttccagaaataaattcatccagtgtg 240

                                                                       
Query: 306 atggtttgtatatacttggcccagaaaatggcactattaggaggcgtgcccttgttggag 365
           ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 239 atggtttgtatatacttggcccagaaagtagcactattaggaggcgtgcccttgttggag 180

                                                                       
Query: 366 tagatgtgtcactgtgggtgtgggctttaagtccttcatcctagctgtctggaagctagt 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 tagatgtgtcactgtgggtgtgggctttaagtccttcatcctagctgtctggaagctagt 120

                                                                       
Query: 426 cttttctgagcagccttcagatgaagatgtagaactctacatcctaccatgactgtcaga 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 119 cttttctgagcagccttcagatgaagatgtagaactctacatcctaccatgactgccaga 60

                                                                      
Query: 486 atgctgccatgctcccaccttgatgataatgaactgaacctctgaatctgtaagccagc 544
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59  atgctgccatgctcccaccttgatgataatgaactgaacctctgaatctgtaagccagc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no142_j17.g1 MSMg01no142_j17.g1 CHROMAT_FILE:
MSMg01no142_j17.g1 PHD_FILE: MSMg01no142_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:30 2005
         (638 letters)



>mm_chr3_77951236_77952273
          Length = 1038

 Score = 1172 bits (606), Expect = 0.0
 Identities = 630/638 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaactggaaatacctggagttctagctccctataaaatatgctggtctgacaaaactat 60
           |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| 
Sbjct: 201 ctaactggaaatacctggagttttcgctccctataaaatatgctggtctgacaaaactag 260

                                                                       
Query: 61  aagactaagtatgaaacacaaaaacaaaagtttctttcttcttttctttcttagctttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagactaagtatgaaacacaaaaacaaaagtttctttcttcttttctttcttagctttta 320

                                                                       
Query: 121 tcaaggtataagggagaagagaactaattcattttcatcctagttaataacttcaaataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaaggtataagggagaagagaactaattcattttcatcctagttaataacttcaaataa 380

                                                                       
Query: 181 ctgaaggtaattaaaaagctgaacaactctctttattaaagaccaagtatgataaaacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgaaggtaattaaaaagctgaacaactctctttattaaagaccaagtatgataaaacat 440

                                                                       
Query: 241 aaatctttaattagagtattttttatttattataaaagttcatagaaattagttactcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatctttaattagagtattttttatttattataaaagttcatagaaattagttactcat 500

                                                                       
Query: 301 taatggagccctcggttttaagaaattataaaagattatattttatcatttaacattttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taatggagccctcggttttaagaaattataaaagattatattttatcatttaacattttt 560

                                                                       
Query: 361 cacgaataacaaagcattaacatttttaaagtgttatcatacttatgcatttattaatct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacgaataacaaagcattaacatttttaaagtgttatcatacttatgcatttattaatct 620

                                                                       
Query: 421 acttagagcacacatacctaaattattctaaaagtaaaacagaatttaaaaattaaatat 480
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acttagagcaaacatacctaaattattctaaaagtaaaacagaatttaaaaattaaatat 680

                                                                       
Query: 481 gttctaaatattcattaaaagtctcaacatataatggatgataaattgtcttattcacac 540
           ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 681 gttttaaatattcattaaaagtctcaagatataatggatgataaattgtcttattcacac 740

                                                                       
Query: 541 aattatctctttaattaagagacctaaaattttaaataatctttcaatcatctgtatttt 600
           ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 741 aattatctctttaattaagagacctaagattttaaataatctttcaattatctgtatttt 800

                                                 
Query: 601 ctatgctatgattgggattgattacagaggcagagagt 638
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctatgctatgattgggattgattacagaggcagagagt 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)