BAC Information

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BAC

Clone NameMSMg01-142N10
Chromosome3 (Build37)
Map Location 28,306,418 - 28,306,733
singlet/doubletsinglet
Overlap geneTnik
Upstream geneFndc3b, E030011K20Rik, Pld1
Downstream geneSlc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527, 6130401L20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-142N10.T7 (MSMg01no142_n10.b1)MSMg01-142N10.TJ (MSMg01no142_n10.g1)
ACCAG347345AG347346
length1,2521,339
length of high quality
(start - end)
316 (81 - 396)56 (137 - 192)
definitionCHROMAT_FILE: MSMg01no142_n10.b1 PHD_FILE: MSMg01no142_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:01 2005CHROMAT_FILE: MSMg01no142_n10.g1 PHD_FILE: MSMg01no142_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTCAGTGGGCGCTATAGACTACTATAGGGAGAGGATCCGCGGAATTC
CAAAAGCTATATTCACCATATAAAGACTGTGAACATTCTTATAAATCATA
GGTCAATTCTATTTGAGATTCACAGCACCACGCTCAGTGTCTTCTTAAAT
GTGACTCTCTTTTTATATTTAAGTAACTAATTTTAGTTCTGCAAATAATA
TAGGAATCATGCTCACTTAAGATCATCAAATCACTCAGAGAAAGAAAGTA
CCCCCTCCTTAATAATCGCATCATAAAATCAAATTCTCAGGGTTGAGCAC
TGTTACCACTGATAGCAAGCATACATAAGTACGGTGAGTTGAGACATTTC
ACACTGTCAGGTGTCTTATGGAAATTTCCTAATTGAGTAGAATTTCTTTT
TTTAAGGCAGTGAGAAGGTGACATGTCTGCACCTGTGACTGAAGTCTGAT
TAGAGCCCAGCCTGGATTTTCCTTTGTGCTTTTGTGTGTGGCTGCTTTCC
TGTTTCACATGATGGACGGGGGAGGGGGAATTGTGTTTTTTTTTTTTCTT
TTTTCGCTTTTTTTCTCTCTTCTTTTTTTTTATTTGTTTGTTCTCTCTTT
TTTTTTCTTTTTGTTTTTATTTTTTTTTTTTTTTTTTTCTTTTCTCCTTT
ATTTATATTTTTTTTCATTTTCTTTTATCTTACTTTTTTACTCTTTTTTT
TTTTATTATTTATTTATTTCTTTTCTCTTATTTATTATTTATTCCTATTT
CTTTTTTTTATTTTTTTTTATTTTATCTTTATTTCTCGTATATTTTCTTA
TTTCATTTTTTCTTTTTTTTTTTCTACTTCTTTTATATTTTTCATATATT
TTATCTTTTTTATTAATATTTTTTTTTTAATTTATTTAATTATTTTATTT
ATTTATTCTTTTTTTCTTTTTTTTATTATTTTTTATTTTTTTCTTTTCTT
TTCTATTCCTATTTTTATATTTTTTCTTTCTTTTATTTTATTCTTATATT
TTTTTCTTTTTCTATTTTTTTCTATTTTTCTTTCTTTTTTTTTTTTATTT
CATTTTTTTTTCTACTTTAACTATTTTTTTTTTAAATATTTTTTTATATA
TATTTATCTTTATTCTCTTTCTTCATTCTTCTTTTTATTTATCATCTTTT
TTTTATTATTTATTAATTAATCTCTAATTTACTATCTGCTCTTTATTTTA
TATACTTTCCATTGTCTTCTAATTCATTATCTTATTATATTTCTTTTCTN
TT
NACGAGTGGAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTCTGCCCGCACTGGTGTGTGCAAAGAGCTAGGA
TAACAGTTACTCCCAGTGTCTGGCCCCCCCATTGGNTGGAAGACTTACAT
GCAGATGGGCAGACAGTTGTACTCAGCAGGCCTGGGAGCGTCAGGCAGCC
TTGTGGTAGGCTAGGTGTGCAGGTCCGTTTGTCTCCGACGGCCAGTAGGT
GATGCCCACAAATGGAAGCGTAGATGGTGGCTGCCTTCCCAGATTTGGAG
AGGTTGGCTCCCAAGCTTGCATATAAGTCCTTCTGAGGAACCCCTGACCC
TGAATTGCAGCGCCGGTCCAGTGTTGCCTTTTCTGTCTCCCCTTTTTTTT
TTCTGTGCTTCTTTATTGCTTACCTTTCTTTGTCTCTTTGTATTTCTCCC
TCTTCTTCCTTTCTTTTCTCTTTTCTTTCTTTTTTTTTTTTTTCTTTTTT
TTTTCTTTTCTCTTTCTTCTCTTCTCCTTTTTTTCTTCCTTTTTTTTTTT
TTCTTTCTCTTTTCTTCTCCTTTTTTCTTCTTCCCTCTCTTTTTTTCCTT
TTTTTTTTCTTTTCCTCTTTTTTTTTTTTTTCTTTCTTCTTCTCTTCTCT
TCCTTTTTTTTTCTTTTTTTTTTTTTTCTTTTCTTTCTTTCTTTTCTTCT
CCTTTCTTCTCTTCTTTTTCTTTTTTTCCTTTTCCTCCTCTTCCTTTTTT
TTTTCCTTCTTTTTTTTTTTTTCTTTTCCTTTCCTCTTTCCTTCTTTTTC
TATTCTTTCCCCCTTCTCCTCTCTCTCCCCCTTCTCCTCTTCCCTCTTCC
TTTTCCCCCTTTTTCTTTCTTTTTCCTTCTTCTCTCTTTTTTCTTTCTCT
TTCCCCCCTTTCCTTCTTTTTCTTTTTCTTCTCCTCTCTTTTTCTCCTCT
TCTTCTTTCCTCCTCCTTCCTTCCCTCTCTCTTCTCTTTTCCCTTTTCTT
CTCTCTTTCTTCCCCCTCCCTCCCCCCTCTCTCTCATCTCCCTCCTCTTC
CCGCCCCACCCCTCCTATTCTCTTTTTCCTTCTTTCCCTCTCCCCCTCTC
TTCCCTCTCGTTCTCCCCCTCTTCTTCTCTTTATTACACCCCCGCNNCCC
CCCCCCCCTTTTTTTTCCCTCTCCTTCTCTCCCTTCTCCTCCCTGCTTCC
TCCATCCCCTCCCTTTCACCCTCCCTTCTCCCCCCTTTCTCCCTCCTCCT
CCATCATCCTCTTCCCTTTTCTCATTCCTCTTTCCCTCTTCCCTTCTCTC
TCTCTCCTTCCTTCCCCCCCCTCCTCCCTCCTCTCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no142_n10.b1 MSMg01no142_n10.b1 CHROMAT_FILE:
MSMg01no142_n10.b1 PHD_FILE: MSMg01no142_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:01 2005
         (316 letters)



>mm_chr3_28306218_28306933
          Length = 716

 Score =  572 bits (296), Expect = e-168
 Identities = 311/316 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaacattcttataaatcataggtcaattctatttgagattcacagcaccacgctcagtgt 60
           |||||||||||||||||||||||||||| || ||||||||||||| | || |||||||||
Sbjct: 516 gaacattcttataaatcataggtcaattataattgagattcacagtaacatgctcagtgt 457

                                                                       
Query: 61  cttcttaaatgtgactctctttttatatttaagtaactaattttagttctgcaaataata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cttcttaaatgtgactctctttttatatttaagtaactaattttagttctgcaaataata 397

                                                                       
Query: 121 taggaatcatgctcacttaagatcatcaaatcactcagagaaagaaagtaccccctcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 taggaatcatgctcacttaagatcatcaaatcactcagagaaagaaagtaccccctcctt 337

                                                                       
Query: 181 aataatcgcatcataaaatcaaattctcagggttgagcactgttaccactgatagcaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aataatcgcatcataaaatcaaattctcagggttgagcactgttaccactgatagcaagc 277

                                                                       
Query: 241 atacataagtacggtgagttgagacatttcacactgtcaggtgtcttatggaaatttcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 atacataagtacggtgagttgagacatttcacactgtcaggtgtcttatggaaatttcct 217

                           
Query: 301 aattgagtagaatttc 316
           ||||||||||||||||
Sbjct: 216 aattgagtagaatttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)