BAC Information

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BAC

Clone NameMSMg01-143A11
Chromosome3 (Build37)
Map Location 121,227,391 - 121,227,791
singlet/doubletsinglet
Overlap geneSlc44a3
Upstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1, Cnn3
Downstream geneA730020M07Rik, 4930432M17Rik, F3, Abcd3, LOC100043298, Arhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143A11.T7 (MSMg01no143_a11.b1)MSMg01-143A11.TJ (MSMg01no143_a11.g1)
ACCAG347485AG347486
length670769
length of high quality
(start - end)
395 (73 - 467)125 (77 - 201)
definitionCHROMAT_FILE: MSMg01no143_a11.b1 PHD_FILE: MSMg01no143_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:27 2005CHROMAT_FILE: MSMg01no143_a11.g1 PHD_FILE: MSMg01no143_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCTCTATAATTGCGGCCGCTATACGACTCCTATATTCCGAGGATCCGC
GGAATTCCTTCACTATCCTCAGAGTTCAAGTGCAGACACACTGTGTCCCA
GGCTCCCGGTTCCTCCAAGGTAAGAACTTATGGGCCAGTACTTGATGCTG
CCTGTACCTCTGCTATACACGGTTAAAAATAAAAGGGTCCCAGTGAGGGA
CAAATAAAGAAGGACTATTTACGATACACGATACATATAATAAACAATGG
CTTGAAACGGAGACAACTCAGCCAACAGTAAGGGTCCATGGGATCTTCAG
ATGCTAGTGCTGGGTGGTCGGGATGGCTCTACGGTGAAGAAGGCAGTTGC
CACAAAGCCTGGTGACGTGAGTTTCATGTCTGGGACCCACATGATGTGAG
GAGAGAACCCACTCCTGACCACCTCCTCTTCTATATGTGCACCATGGTGC
ACATCACACACACACACACACACCATTTTTTAAGACAATGAAAACAAATA
TATAAACTATCAAACAAATGACTTTATGACAAGGCTAATGTACACTTTTC
CTTCTCCAGTTCTTGGTTACTATTTAGAGTGAAACCATCAATATTCACAC
TTTCATTGCACCAGTGTTGATAGTCCTTGCTGTTCAAGATTGCGCCATAA
AAATAGGCTGGGGTCCTGGA
CCCGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAGAAGTGTTGGGGGAAAGGTTT
GAAGGGACACTGAAAGCAAGAAGCTAGGATATTCAGAACCTGCCATTTGG
TCTCCTGGTTGATTTTTGTTTGTTTATTTATTTATTTATTTGGTTTGCTT
CATTTGTTCTTTATCCCACTCCCCACACACCACATATCCCCTCTGATTAC
ACTCTTTCTTTCATTATTAATCATGACACCCCAATTCCCCTTTCCCATCT
TCTATACTTCCTCACTCCCCCCCTATTTTTTTTTCCTTCTAACCAGCCTT
ATTCTCCACATTCTCTTCCCCCCCACCCCCTATTCTCTTCCAATACATTC
TTATCCACCTCGCGATTCTCAATTCGCCGATTCTTTTTTCGCACCCCCCT
AAACCCGTTAGTTTTCACTCCACCACCCACATACACTCTCCCCACTTCAT
CTCGTTTTTCCCCCTCCTCTAATAACAATATCCACTTACATCAATCCCAC
CCCCCACCCCCTCCCCTATATTATAACATTACTTCCCTTTCAAACTTCCA
CTTCATACCATATTTATCTCATCCCCCCCCCCGCCCCACTCTTTATACTT
TCCTCCATCTTCACCCTCTTTTCCTCCCCCCTTTACACTACTCTACTTCA
CCTACTCCAAAATAACACTATCTCTCTCCTTTCCCTTTCTTTTCCCCTTC
CCCCCCCTCCCCTCCCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_a11.b1 MSMg01no143_a11.b1 CHROMAT_FILE:
MSMg01no143_a11.b1 PHD_FILE: MSMg01no143_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:27 2005
         (395 letters)



>mm_chr3_121227347_121228147
          Length = 801

 Score =  717 bits (371), Expect = 0.0
 Identities = 391/401 (97%), Gaps = 6/401 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agttcaagtgcagacacactgtgtcccaggctcccggttcctccaaggtaagaacttatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 445 agttcaagtgcagacacactgtgtcccaggctcccggttcctccaaggtaagagcttatg 386

                                                                       
Query: 61  ggccagtacttgatgctgcctgtacctctgctatacacggttaaaaataaaag------g 114
           |||||||||||||||||||||||||||||||||||||||||||||||||||||      |
Sbjct: 385 ggccagtacttgatgctgcctgtacctctgctatacacggttaaaaataaaagggtgcag 326

                                                                       
Query: 115 gtcccagtgagggacaaataaagaaggactatttacgatacacgatacatataataaaca 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtcccagtgagggacaaataaagaaggactatttacgatacacgatacatataataaaca 266

                                                                       
Query: 175 atggcttgaaacggagacaactcagccaacagtaagggtccatgggatcttcagatgcta 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atggcttgaaacggagacaactcagccaacagtaagggtccatgggatcttcagatgcta 206

                                                                       
Query: 235 gtgctgggtggtcgggatggctctacggtgaagaaggcagttgccacaaagcctggtgac 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gtgctgggtggtcgggatggctctacggtgaagaaggcagttgccacaaagcctggtgac 146

                                                                       
Query: 295 gtgagtttcatgtctgggacccacatgatgtgaggagagaacccactcctgaccacctcc 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||
Sbjct: 145 gtgagtttcatgtctgggacccacatgatgtgaggagagaacccactcctgaaaatctcc 86

                                                    
Query: 355 tcttctatatgtgcaccatggtgcacatcacacacacacac 395
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  tcttctatatgtgcaccatggtgcacatcacacacacacac 45


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 801
Length adjustment: 9
Effective length of query: 386
Effective length of database: 792
Effective search space:   305712
Effective search space used:   305712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)