Query= MSMg01no143_b07.b1 MSMg01no143_b07.b1 CHROMAT_FILE:
MSMg01no143_b07.b1 PHD_FILE: MSMg01no143_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:32 2005
(396 letters)
>mm_chr3_45598641_45599438
Length = 798
Score = 679 bits (351), Expect = 0.0
Identities = 387/399 (96%), Gaps = 4/399 (1%)
Strand = Plus / Minus
Query: 1 tttactcctctttcaggca-tatcacatatttttgtttgtttcaggctttttttcctttg 59
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tttactcctctttcaggcagtatcacatatttttgtttgtttcaggctttttttcctttg 539
Query: 60 tttaattggtttgac-ttttacactatgtgagcattgggaaggaaggggtgtttcaaggc 118
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tttaattggtttgactttttacactatgtgagcattgggaaggaaggggtgtttcaaggc 479
Query: 119 tatggcacttagtgccccagttttctgaaagatcatgcaacaatgatttttctctcttcg 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 478 tatggcacttagtgccccagttttctgaaagatcatgcaacaatgatttttctctcctca 419
Query: 179 ttgttatgctctgcattaaacattgtggcttactttgatagtacataagtatttctgaaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 418 ttgttatgctctgcattaaacattgtggcttactttgatagtacataagtagttctgaaa 359
Query: 239 ttcaggattatccttgacactctcatttctatagacaccacctgtttcccagaatcaaat 298
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ttcaggagcatccttgacactctcatttctatagacaccacctgtttcccagaatcaaat 299
Query: 299 ctctaaataattggatcttgggatagttaacttaatgttttacac-accatagagggtgg 357
|||||||||||||||||||||||||||||| ||||||||||| || | |||||||||||
Sbjct: 298 ctctaaataattggatcttgggatagttaatttaatgtttta-actaagatagagggtgg 240
Query: 358 cactcaaatatttgattagtgatggtgttgtgaaatgtt 396
|||||||||||||||||||||||||||||||||||||||
Sbjct: 239 cactcaaatatttgattagtgatggtgttgtgaaatgtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 798
Length adjustment: 9
Effective length of query: 387
Effective length of database: 789
Effective search space: 305343
Effective search space used: 305343
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_b07.g1 MSMg01no143_b07.g1 CHROMAT_FILE:
MSMg01no143_b07.g1 PHD_FILE: MSMg01no143_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:32 2005
(630 letters)
>mm_chr3_45424799_45425828
Length = 1030
Score = 1174 bits (607), Expect = 0.0
Identities = 619/623 (99%)
Strand = Plus / Plus
Query: 8 aatgtgagttttaatatgcctgactctaaactagcaatgcatcactggcataaactttga 67
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 aatgtgggttttaatatgcctgactctaaactagcaatgcatcactggcataaactttga 267
Query: 68 tagaaagaggacttctgtcacttcttcaatactctcccaagtcaatgaactaaatcagga 127
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tagaaggatgacttctgtcacttcttcaatactctcccaagtcaatgaactaaatcagga 327
Query: 128 acttattctagtctagatacatttaagacatcattaagaaaggcccacagagtaggacaa 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 acttattctagtctagatacatttaagacatcattaagaaaggcccacagagtaggacaa 387
Query: 188 gggtttgtgagttaaatggatggatggatatgttcagagagtactgaaattggtctttta 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gggtttgtgagttaaatggatggatggatatgttcagagagtactgaaattggtctttta 447
Query: 248 cagttttatagcacacaccataaccatggcaactttaaaataaagacatttaaggataga 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cagttttatagcacacaccataaccatggcaactttaaaataaagacatttaaggataga 507
Query: 308 taccagagaaatctgaaagggtacatgcagtataaatgcatctatgtgtggacagtacaa 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 taccagagaaatctgaaagggtacatgcagtataaatgcatctatgtgtggacagtacaa 567
Query: 368 cacacctagtcaagtgctacatgtttatgtaattatgaacacaaggaaggataaacatag 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cacacctagtcaagtgctacatgtttatgtaattatgaacacaaggaaggataaacatag 627
Query: 428 tcttttctgtaagaggaaaaaggatgaattagggggacctggctcactggataagagtac 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tcttttctgtaagaggaaaaaggatgaattagggggacctggctcactggataagagtac 687
Query: 488 tcactgtacatggatgaagaccttagtccaaacccccagcacccatgtaaatggcatgga 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tcactgtacatggatgaagaccttagtccaaacccccagcacccatgtaaatggcatgga 747
Query: 548 tacatatgcctgttactccagtactattggggtgaccacagtaaaatccttcacttgatg 607
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 748 tacatatgcctgttactccagtactattggggtggccacagtaaaatccttcacttgatg 807
Query: 608 tctatcagcttaacctcaggtta 630
|||||||||||||||||||||||
Sbjct: 808 tctatcagcttaacctcaggtta 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
