Query= MSMg01no143_b11.b1 MSMg01no143_b11.b1 CHROMAT_FILE:
MSMg01no143_b11.b1 PHD_FILE: MSMg01no143_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:33 2005
(559 letters)
>mm_chr3_134555830_134556791
Length = 962
Score = 965 bits (499), Expect = 0.0
Identities = 545/561 (97%), Gaps = 6/561 (1%)
Strand = Plus / Plus
Query: 4 ggaattctaccactactgtcagggaaaggatca-t-ctctttctgcttccttttatggtg 61
||||| ||||||||| ||||||||||||||||| | | |||||||||||||||||||||
Sbjct: 204 ggaatcctaccactaatgtcagggaaaggatcaatgc-ctttctgcttccttttatggta 262
Query: 62 cattatagttaaaatgaatctacagaaaaaa--tgggagagaaatgagttgttttatgaa 119
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 263 cattatagttaaaatgaatctacagaaaaaaaatgggagagaaatgagttgttttatgaa 322
Query: 120 attattttatttatttacattccaaatgttgccccctcctggtcccccctcccctcgctc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 323 attattttatttatttacattccaaatgttgccccctcctggtcccccctccccttgctc 382
Query: 180 tttacaccatcctctcccctttgcctctgagagagtgcacactcaccaatctatccacct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tttacaccatcctctcccctttgcctctgagagagtgcacactcaccaatctatccacct 442
Query: 240 cacttccccatcccctttccctggggcatcaaatctcctcaggattacacacatcctttc 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 443 cacttccccatcccctttccctggggcatcaaatctcctcaggattacacacattctctc 502
Query: 300 ccactgagaccaggcaagaaaatcccttgctacatatgttctgggggaccacagagcagc 359
||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 503 ccactgagaccagacaagacaatcccttgctacatatgttccgggggaccacagagcagc 562
Query: 360 ccatgtatgctctttggttggtggcttagtctctgggagctcccaggggtccgggttagt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ccatgtatgctctttggttggtggcttagtctctgggagctcccaggggtccgggttagt 622
Query: 420 tgatacttctgttcttcctatggggttaccattcccttcagctccttcgatcctttccac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgatacttctgttcttcctatggggttaccattcccttcagctccttcgatcctttccac 682
Query: 480 agctcttccata-gggtccccaacctcagtgcagtggttgactgtaagtttctgcatctg 538
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 683 agctcttccatatgggtccccaacctcagtccagtggttgactgtaagtttctgcatctg 742
Query: 539 tctcagtcagatgctggtaga 559
|||||||||||||||||||||
Sbjct: 743 tctcagtcagatgctggtaga 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 962
Length adjustment: 10
Effective length of query: 549
Effective length of database: 952
Effective search space: 522648
Effective search space used: 522648
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_b11.g1 MSMg01no143_b11.g1 CHROMAT_FILE:
MSMg01no143_b11.g1 PHD_FILE: MSMg01no143_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:33 2005
(339 letters)
>mm_chr3_134703948_134704686
Length = 739
Score = 634 bits (328), Expect = 0.0
Identities = 334/336 (99%)
Strand = Plus / Minus
Query: 1 ttctctagtatctgttacagcagtaaagagtgtagatgctcgatcactttggtcttcaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ttctctagtatctgttacagcagtaaagagtgtagatgctcgatcactttggtcttcaca 477
Query: 61 attaaagtctcagattcaccctgcctatttgtcgtgaacggaagagtccttactactttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 attaaagtctcagattcaccctgcctatttgtcgtgaacggaagagtccttactactttc 417
Query: 121 tggcaagttaattgtgctgatttgaggtatggattttaaaaaaataagcatgcattattc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tggcaagttaattgtgctgatttgaggtatggattttaaaaaaataagcatgcattattc 357
Query: 181 agcttcgcaaactcatttgaatgaaacagggttataataacatgccaagtgtgctagtcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 agcttcgcaaactcatttgaatgaaacagggttataataacatgccaagtgtgctagtcc 297
Query: 241 ttttccccaagtgttctagtctccacctcacagtccctgcttttattacatatgatgcac 300
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 296 ttttccccaagtgttctagtctccacctcacagtccctgcctttactacatatgatgcac 237
Query: 301 cctgcagatagcatgggtgacacaggcagatccatg 336
||||||||||||||||||||||||||||||||||||
Sbjct: 236 cctgcagatagcatgggtgacacaggcagatccatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space: 240900
Effective search space used: 240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
