CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAAT
TCCTTGATGCAGAAGTGTTGCTTGGTTTATATTAATGATATTATATTTTC
TAAAAATTAAAAATGATATAATGATGCATGGATAATTATACTAATTTATA
GTTAATGGCTTGAACAGTAGGAAAAGTAGTGGTTTATACAAAAAGAAAAT
ATGTTGTATATACTTGGCATCATTTATTATTTAATGAATTACTAAATATT
TATTAAGAAAAATGGTTTAAAATTTTGTTTAATAATGGTTTGGGCATCAT
TTCTTACATCATTATCACTTTTTATTATTTTCCCTTAATTTTTAGACTCA
TATCAATATTATTCAAAATGGAAGACTAGCATTTAACTCTACCCATATAT
CTTAAAGTGCTAGAGACCATCTATTACTACTTGAAAATTTTGCTTTGGGT
GTCTTAATTTTCCACAAACTCCAAACATCTTATTTCTTAACATTGTTTGA
AGTTTTAATCAATTTTATCATTATTGGAATCATTAATCTGTTTTTCAAAT
AAGTTACATTTGGCAACATCCAGATTGTAGACCTAGGCAATGAAAGTTTG
TTGGCTTCTTTCAGGTAGTTCTGAGTTCCAAACCACAGAACTCACCTATG
ATGAGATTCACCCCAAATATAACCCCTTTGTGTTTGAGAAAATAC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTCTTTTTAAAGTAGTTCATGGCATTT
TTCTTATTGTTTATTTACTTAGATACCAAATGCTGCCCCCTCCAGTGATT
CCCCCTCTCACAAAGATCCTCCCCCAACCTCTTTCCTTTCTCCTCTGAGA
GAGTGGGTTCCTCCTGGGTTTTCCCCCATTCTGATTTATTAAGTCTGCCA
GATGAGATGCATCCTCTCCCACTGAGGCCAGACAGGGCAGCCTTACAGCA
GCAGCTTTAGGGAGAGCCTCTGTTCATGTTGTTGGGGGACTATGTGAAGC
CTGAGCTGCACACCTGTCATGTATGCACTGGGGGCCTTGTTCTAGCCAGT
GTGTGTTCTTTGGTTGGTGGCTGAGTCTCTGAGAGCACCAAGAGGCCCAG
GTTAGTTCACTCTGTTCCTCTGTTAATAGTCCTGTGGGGTTCGCATCTTC
TTAAGGGCCTTCAGTCCTTCCCACAACTCTTGCATATGAGTCCCTGACTT
CCATCCAATGTTTGGCTGTGATTATCTGCATGTTTCAGATAGCTGCTGGT
TGGAGTCACTCAGAAGACAATTATGCTAGGCTCTTGTCTACAACCATATG
CTGAATTATAATTACCTGATGACACTACCCTGGGAAGTCTAGATN

Query= MSMg01no143_d09.b1 MSMg01no143_d09.b1 CHROMAT_FILE:
MSMg01no143_d09.b1 PHD_FILE: MSMg01no143_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:42 2005
         (652 letters)



>mm_chr3_140908424_140909475
          Length = 1052

 Score = 1160 bits (600), Expect = 0.0
 Identities = 636/648 (98%), Gaps = 4/648 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattccttgatgca-gaagtgttgcttggtttatattaatgatattatattttctaaaa 65
           ||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattccttgatgtaagaagtgt-gcttggtttatattaatgatattatattttctaaaa 265

                                                                       
Query: 66  attaaaaatgatataatgatgcatggataattatactaatttatagttaatggcttgaac 125
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 266 attaaaaatgatataatgatgcatggataattatactaatttatagttaatggcttcaac 325

                                                                       
Query: 126 agtaggaaaagtagtggtttatacaaaaagaaaatatgttgtatatacttggcatcattt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agtaggaaaagtagtggtttatacaaaaagaaaatatgttgtatatacttggcatcattt 385

                                                                       
Query: 186 attatttaatgaattactaaatatttattaagaaaaatggtttaaaattttgtttaataa 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 attatttaatgaattactaaatatttattaagaaaaatggtttaaaattttgtttaataa 445

                                                                       
Query: 246 tggtttggg-catcatttcttacatcattatcactttttattattttcccttaattttta 304
           ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tggtttgggtc-tcatttcttacatcattatcactttttattattttcccttaattttta 504

                                                                       
Query: 305 gactcatatcaatattattcaaaatggaagactagcatttaactctacccatatatctta 364
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gactcatatcaatattactcaaaatggaagactagcatttaactctacccatatatctta 564

                                                                       
Query: 365 aagtgctagagaccatctattactacttgaaaattttgctttgggtgtcttaattttcca 424
           ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 565 aagtgttagagaccatctattactacttgaaaattttgccttgggtgtcttaattttcca 624

                                                                       
Query: 425 caaactccaaacatcttatttcttaacattgtttgaagttttaatcaattttatcattat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caaactccaaacatcttatttcttaacattgtttgaagttttaatcaattttatcattat 684

                                                                       
Query: 485 tggaatcattaatctgtttttcaaataagttacatttggcaacatccagattgtagacct 544
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tggaatcattaatttgtttttcaaataagttacatttggcaacatccagattgtagacct 744

                                                                       
Query: 545 aggcaatgaaagtttgttggcttctttcaggtagttctgagttccaaaccacagaactca 604
           ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 745 aggcaatgaaagttttttggcttctttcaggtagttctgagttccaaaccatagaactca 804

                                                           
Query: 605 cctatgatgagattcaccccaaatataacccctttgtgtttgagaaaa 652
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cctatgatgagattcaccccaaatataacccctttgtgtttgagaaaa 852


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)