BAC Information

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BAC

Clone NameMSMg01-143F02
Chromosome3 (Build37)
Map Location 46,231,250 - 46,231,861
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039282, LOC433580, LOC671801
Downstream geneEG241989, LOC545517, LOC383849, LOC383850
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143F02.T7 (MSMg01no143_f02.b1)MSMg01-143F02.TJ (MSMg01no143_f02.g1)
ACCAG347694AG347695
length713673
length of high quality
(start - end)
617 (45 - 661)531 (78 - 608)
definitionCHROMAT_FILE: MSMg01no143_f02.b1 PHD_FILE: MSMg01no143_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:51 2005CHROMAT_FILE: MSMg01no143_f02.g1 PHD_FILE: MSMg01no143_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGAAGCTGGCATATAGAAGATCATTGGAGCAATTTAAGTGACTAAG
CATGTAGTATCTGCAAACTCTTGGTTTTACTGAGAACATCATGTCAAAGA
AAAAGTGGGAGTGATTGAGAAAGTGATGTCTCTGTCTTAGTCCTTTGCAA
TTTACATGCATATGCTTAAAGTAACTCACACACATTCAAAAATATACATG
TACACACATATGGGAAAAAGGTAAGTTATTAGGTAAATTTGTTAATGCTT
AACATGATATTTTAGTATTTCATAAGTTAAGATAGTTTGCATTTTTATCT
ATGTTCAGAATACATACCCAAATTTAGAGTACTATAATTTAATTTTCAAA
TAAAATTTCCTTCTCCCATTTCACTCCTAATTTTTCTCTGTGTCTATAGT
ATTATATGCATTTTACTCATATATTAAAACTACAAAAACCAAATTCCACT
GTCACAACTATTTCCAAAAAAGCATCCCATGTTTTAAAATACATCCAGAA
GTAAAATTCAGTTGAATGTCATCACATTTTGATTTGACAAATTAAAAGTT
TATGAAATAGTGTATGTTACATTAATCCATTAACTTTGATTTGACTTTAT
AATGTAACAACAATTAAAATAAAATAAGCCATGGGATTTGAGAGAAGATG
AAGGGTTGGGACA
NTTTACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGATGTTTTGAGTTAGGATCT
TTTTGCGTTTTGTATTATCTTTGATTGTTGTGCCGATGTTCTGTATGGAA
TCTCTGCACCTGAGATTTTCTCTTCCATCTCTTGTATTCTGTTGCTGATG
CTCACCTCTATGGTTCCAGATTTCTTTCCTAGGGTTTCTATCTCCAGAGT
CGCCTCACTTTGTGTTTTCTTTATTGTGTCTACTTCCGTTTTTAGGTCTC
AGATGGTTTTATTCAATTCCTTCACCTGTTTGGTTGTGTTTTCCTGTAAT
TCTTTAAGGGATTTTTGTGCTTCCTCTTTAAGATCTTCTTCCAGTTTAGC
AGTGTTCTCCTGTATTTTTTTGAGTGAGTTATTAAGGTCCTTCTTGACCT
CCTCTACCATCATCATGAGATATTCTTTTAGATCCACGTCTAGCTTTTCG
GGTGTATTGGGGTGCCCTGGACTGGGCGAGGTGGGAGTGCTGGGTTCTGG
TGATGGTGTGTGGTCTTGGTTTCTGTTAGTAAGGTTCTTATGTTTACCTT
TCCCTATCTGACAATCTCTGGAGTTAGTTGATTTAGTTGTCTCTGGCTAG
AGCTTGTTCCTTCAGTGATTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_f02.b1 MSMg01no143_f02.b1 CHROMAT_FILE:
MSMg01no143_f02.b1 PHD_FILE: MSMg01no143_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:51 2005
         (617 letters)



>mm_chr3_46231046_46232061
          Length = 1016

 Score = 1178 bits (609), Expect = 0.0
 Identities = 612/613 (99%), Gaps = 1/613 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagaagctggcatatagaagatcattggagcaatttaagtgactaagcatgtagt 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 gaattcagaagctgg-atatagaagatcattggagcaatttaagtgactaagcatgtagt 758

                                                                       
Query: 65  atctgcaaactcttggttttactgagaacatcatgtcaaagaaaaagtgggagtgattga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 atctgcaaactcttggttttactgagaacatcatgtcaaagaaaaagtgggagtgattga 698

                                                                       
Query: 125 gaaagtgatgtctctgtcttagtcctttgcaatttacatgcatatgcttaaagtaactca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 gaaagtgatgtctctgtcttagtcctttgcaatttacatgcatatgcttaaagtaactca 638

                                                                       
Query: 185 cacacattcaaaaatatacatgtacacacatatgggaaaaaggtaagttattaggtaaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 cacacattcaaaaatatacatgtacacacatatgggaaaaaggtaagttattaggtaaat 578

                                                                       
Query: 245 ttgttaatgcttaacatgatattttagtatttcataagttaagatagtttgcatttttat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ttgttaatgcttaacatgatattttagtatttcataagttaagatagtttgcatttttat 518

                                                                       
Query: 305 ctatgttcagaatacatacccaaatttagagtactataatttaattttcaaataaaattt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ctatgttcagaatacatacccaaatttagagtactataatttaattttcaaataaaattt 458

                                                                       
Query: 365 ccttctcccatttcactcctaatttttctctgtgtctatagtattatatgcattttactc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ccttctcccatttcactcctaatttttctctgtgtctatagtattatatgcattttactc 398

                                                                       
Query: 425 atatattaaaactacaaaaaccaaattccactgtcacaactatttccaaaaaagcatccc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 atatattaaaactacaaaaaccaaattccactgtcacaactatttccaaaaaagcatccc 338

                                                                       
Query: 485 atgttttaaaatacatccagaagtaaaattcagttgaatgtcatcacattttgatttgac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 atgttttaaaatacatccagaagtaaaattcagttgaatgtcatcacattttgatttgac 278

                                                                       
Query: 545 aaattaaaagtttatgaaatagtgtatgttacattaatccattaactttgatttgacttt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 aaattaaaagtttatgaaatagtgtatgttacattaatccattaactttgatttgacttt 218

                        
Query: 605 ataatgtaacaac 617
           |||||||||||||
Sbjct: 217 ataatgtaacaac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1016
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1006
Effective search space:   610642
Effective search space used:   610642
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)