BAC Information

Click to search

BAC

Clone NameMSMg01-143J07
Chromosome3 (Build37)
Map Location 122,524,176 - 122,524,811
singlet/doubletsinglet
Overlap genePde5a
Upstream geneLOC100043298, Arhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3, Fnbp1l, Ppia-ps3_2252.1
Downstream geneLOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2, Synpo2, Sec24d, G430022H21Rik, Prss12, EG668804, Ndst3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143J07.T7 (MSMg01no143_j07.b1)MSMg01-143J07.TJ (MSMg01no143_j07.g1)
ACCAG347889AG347890
length6961,700
length of high quality
(start - end)
639 (43 - 681)---
definitionCHROMAT_FILE: MSMg01no143_j07.b1 PHD_FILE: MSMg01no143_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:10 2005CHROMAT_FILE: MSMg01no143_j07.g1 PHD_FILE: MSMg01no143_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCCCCCCACAGAACCTTGGGACCTCTGGACTTGGGCTCTGGGAGCTGC
CTAGTGTAAGTACATTGGTGTGCCTGCGGCGGGTGTGTTCTCCCTGAGCC
TTGACATCTCAGTACCCATCTCCTTCCTCTGGATATTTCTGAACAGTCCG
GAGGGGAGATAACAGATCAGCTACAGCAGGAGGATTTTAAATGAAAGCCC
CAAGTTTTACTTTGATGTGTTTTGAGAGTATGCATTGGCATCACATAGGA
AACTACTTGTGATTAATGAAAGCAGCAAGAAAATCATCGGGGAGACTGCA
AATTTGGTGTCTACGTACATCTTTCACTAGTTCAAAAGCGTAAGGCTGCT
GCTATTGAATTGCCCATACATACCCTGCAATTGAATCAATGGCTAAAGTC
ATTCCTAACTGTTGTTTGGAATTTGATAAAACATATAAGGCTTGGAGCCT
TTTGAGGATGGTCCCCTCCATCCCAGCATCCATTGCACCCCACTTCCTGA
GTCTCTGGGGGAGGGAGAACTGTCACAATAACTCCTGCTTAGAACCTGAA
GCAGGGCTCAGGTTAATTGTCAGTAAAGAGGCTTGGTCGGTAGTTGATAA
CACCTTTGAGGAAGGCCAAAGACTGCCTGGGATAAGGGACAGTCTT
NNNNNNNNNTTTTTTTTTNNNNNTTTNNNNNNNNTTTNNATTTTATTTTN
TTATTTATNTTATTATTTNNATTTATATTTTAATATATTATTTTATANNA
AAAAAAAATAAGTAAGTGTAGANNNGTGATGGGNCGGGCGCGGAGGCCGG
TCCCTCGTCTCTCCCGCGGAGCGNCCTGCACGCGCGCGCACAAGAGCGAC
ACAGTGATCGCCGTGCAGGATATACTACATAATATGACGCACGTNAGGAT
ATGATTGAGATACGGCACTATCACGGATATTCANCCTGCGGATCCGGCGC
GCGATGATCGCTGTAAACGAGGCACGCTGCACGTGACATATCTGCGACGT
TGCTACGTCTGTGTAGTGTATGTCTCGTCTCGGGCGGGAGCGAGCGGCGG
GCGAGCGAGAGCGCAGGCGTGCGGAAGACGTGTGTGTCTATGGCGCAGTT
TGTCTTGGTATTCTCGTACGACGGCCGTATATTTCCGATTGTCGTGATAA
GAACGGATTCTGATGGTACTCTCTCTCACTCTATCTGGCTCGACGCACGC
GTATATATACGACTCGACACACNACTCGCACTACTCTCTATTCTACACTC
ACGTGCCGTCGAGCGCTACGCGCGCGCGCTTCGTGCTCTAGCGAGTCTGC
GATGACGGATTGTCCTCATGATTGATGCGTCGCCCTCCTCGCGTGTGNNT
CGCTGCGTGTCGTCTCCTTATCATACCGTNTTGCGCGGCAGNGTCGGTAC
GGACGTCGATCGAGTACGGACATATTCGTCTGCGGTGGTCCATACCAGTG
ACTCGCCGGATGAACTANGCATGAGTTCACGAGTATATTANCTAACACTC
TATATACACACACATTCATCGCTAGCTTGACACATGCGCGNACTCACGTG
CTGTGTCCCGCGCGCGTATATTATNCTATAATTTATCTCTCTGCCTACAC
NCGCGACAACCGCTCGTAGTCTAAATCTACACGATGTNCGCATGCGCAGT
CTAGACATCGGTCACATACGAGCGGCATGTGATATAGATTTGATGATCCT
CAGTCGGCGATATCAGCACGGATTCGTGCGTATATATATGATCAGTGTCG
TCTGTGTACATAGGGAGTGCGGGCGTCGTATTCGTGCTGCGGACGTGATG
TGTGTCGAGCTCGCGACGCGCATCTGAACTCGAGTATATTGTGTCGGCCG
GAGAGAAGATGGAGCGTCACACTTGTGCGTCGCGAATATACGTAATCATA
CGTGACAGAAACATATGACGGCTGTTACTATATCATGTCTTCATACGAGT
ATATGCACTCTACGTGCGTCTACTTATATANTTATATATCTANTACATAC
ATCTCGCTGCAGGATAGTTATACTGTATCGTGCANCGCTGATCTGCAGTG
CGCGCNCGCAGCGCATGNTAGTNTCGTNCTGAGCGATGNTNCNTCTGCTG
CGTNCTGGACGTATTNCGTACTGTNTGCTCTCGCNGACTCGCGCTGTCTA
CCGTCTGTGAGCGTCTGCTCCACTGATCGTTTGTGCTGTGTGTGTGCTGA
TCGCGNNCACGGANTAGTCGGCGACGTGTACGACATGTGTGCGTNGTGAN
CGATACGTGNGTGACGAGGAGTTCNGAGAGCGCGGGTNGGTTGTGCGGTA
CGCGACATTGCGATGTCGTATACTATGCAGTCCACCTGCAGTNACGTAGN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_j07.b1 MSMg01no143_j07.b1 CHROMAT_FILE:
MSMg01no143_j07.b1 PHD_FILE: MSMg01no143_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:10 2005
         (639 letters)



>mm_chr3_122523973_122525011
          Length = 1039

 Score = 1123 bits (581), Expect = 0.0
 Identities = 623/637 (97%), Gaps = 2/637 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctccccccacagaaccttgggacctctggacttgggctctgggagctgccta-g 62
           ||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 839 ggaattctcccccaaaagaaccttgggacctctggacttgggccctgggagctgcctatg 780

                                                                       
Query: 63  tgtaagtacattggtgtgcctgcggcgggtgtgttctccctgagccttgacatctcagta 122
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 t-taagtacattggtgtgcctgcggcgggtgtgttctccctgagccttgacatctcagta 721

                                                                       
Query: 123 cccatctccttcctctggatatttctgaacagtccggaggggagataacagatcagctac 182
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 720 cccatctccttcctctggatatttctgaacagtccggtggggagataacagatcagctac 661

                                                                       
Query: 183 agcaggaggattttaaatgaaagccccaagttttactttgatgtgttttgagagtatgca 242
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 660 agcaggaggattttaaatgaaagccccaagttttactttaatgtgttttgagagtatgca 601

                                                                       
Query: 243 ttggcatcacataggaaactacttgtgattaatgaaagcagcaagaaaatcatcggggag 302
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 600 ttggcatcatataggaaactacttgtgattaatgaaagcagcaagaaaatcatcagggag 541

                                                                       
Query: 303 actgcaaatttggtgtctacgtacatctttcactagttcaaaagcgtaaggctgctgcta 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 actgcaaatttggtgtctacgtacatctttcactagttcaaaagcgtaaggctgctgcta 481

                                                                       
Query: 363 ttgaattgcccatacataccctgcaattgaatcaatggctaaagtcattcctaactgttg 422
           ||||||||   ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 480 ttgaattgtgtatacataccctgcaattgaatcaatggctaaagtcattcctaactcttg 421

                                                                       
Query: 423 tttggaatttgataaaacatataaggcttggagccttttgaggatggtcccctccatccc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tttggaatttgataaaacatataaggcttggagccttttgaggatggtcccctccatccc 361

                                                                       
Query: 483 agcatccattgcaccccacttcctgagtctctgggggagggagaactgtcacaataactc 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 agcatccattgcaccccacttcctgagtctctgggggagggagaactgtcacaataactc 301

                                                                       
Query: 543 ctgcttagaacctgaagcagggctcaggttaattgtcagtaaagaggcttggtcggtagt 602
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 300 ctgcttagaacctgaagcagggctcaggttaattctcagtaaagaggcttggtcggtagt 241

                                                
Query: 603 tgataacacctttgaggaaggccaaagactgcctggg 639
           |||||||||||||||||||||||||||||||||||||
Sbjct: 240 tgataacacctttgaggaaggccaaagactgcctggg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)