Query= MSMg01no143_p07.b1 MSMg01no143_p07.b1 CHROMAT_FILE:
MSMg01no143_p07.b1 PHD_FILE: MSMg01no143_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:39 2005
(570 letters)
>mm_chr3_142974472_142975442
Length = 971
Score = 917 bits (474), Expect = 0.0
Identities = 547/574 (95%), Gaps = 10/574 (1%)
Strand = Plus / Plus
Query: 5 gaattctttagttccgtttattttgcaattaatttcagccaaggaataataatgatgatg 64
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gaattctttagttatgtttattttgcaattaatttcagccaaggaataataatgatgatg 259
Query: 65 atgataa---caataata-gtttttatatttcatcaagaatttattattattattatt-- 118
||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 260 atgataataacaataataagtttt-atatttcatcaagaatttattattattattattat 318
Query: 119 -gactgagtctccatatgtaaccccagatggcttagaacttgatatgtagaccaggttgc 177
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgactgagtctccatatgtaactccagatggcttagaacttgatatgtagaccaggttgc 378
Query: 178 ccttgaatttacagagatgtgcctgcttctgtgtcccaggtgttagaattttaggagagc 237
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
Sbjct: 379 ccttgaatttacagagatgtgccggtttctgtgtcccaggtgttagaattttaggagc-c 437
Query: 238 tctaccattcttggcctcaccgtggaattcttaagtctgtccataatatttatgagttcc 297
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 438 tctaccattcttggcctcaccgtggaattcttaagtctgtctataatatttatgagttcc 497
Query: 298 agaatttttcagctgtgtggttttaagttcttttctaaaatgttgttaaattacaaatgc 357
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 498 agaattttccagctgtgtggctttaagttcttttctaaaatgttgttaaattacaaatgc 557
Query: 358 actatgttcacgcccaggattgtttagtagagtgaagataacagctctcaaaatttgtct 417
|||| ||||| | ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 558 actaagttcatggataggattgtttagtagagtgaagataacagctctcaaaatttatct 617
Query: 418 cagaggtaagaaaatgtcctatctggattctcccttgatatgtttctatgctcttaggct 477
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 618 cagaggtaagaaaatgtcctatctggattctcccttgatatgtttctatgatcttaggct 677
Query: 478 ctgacattttattgcttgcttgtactggttatttttt-gcttacttgagtcactgtatat 536
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 678 ctgacattttattgcttgcttgtactgattatttttttgcttacttgagtcactgtatat 737
Query: 537 gaagatattcaaggtaatttggggtttggattga 570
||||||||||||||||||||||||||||||||||
Sbjct: 738 gaagatattcaaggtaatttggggtttggattga 771
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 971
Length adjustment: 10
Effective length of query: 560
Effective length of database: 961
Effective search space: 538160
Effective search space used: 538160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_p07.g1 MSMg01no143_p07.g1 CHROMAT_FILE:
MSMg01no143_p07.g1 PHD_FILE: MSMg01no143_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:39 2005
(177 letters)
>mm_chr3_143125745_143126321
Length = 577
Score = 319 bits (165), Expect = 5e-92
Identities = 174/177 (98%)
Strand = Plus / Minus
Query: 1 tttccaagccctcatctgggatgtgtggctgcacagtcacgctgaagtctttaggaatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tttccaagccctcatctgggatgtgtggctgcacagtcacgctgaagtctttaggaatga 318
Query: 61 gcattatttattgtctatcatttttgcagaagacccacgcagagggaaagctcttggaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gcattatttattgtctatcatttttgcagaagacccacgcagagggaaagctcttggaga 258
Query: 121 atgtggtgttgggaaggagatattttggtttcatatgactaccgagattgtatctac 177
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 257 atgtggtgttgggaaggagatattttggtttcatatgactagtgagattgtgtctac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 577
Length adjustment: 8
Effective length of query: 169
Effective length of database: 569
Effective search space: 96161
Effective search space used: 96161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
