Query= MSMg01no143_p17.b1 MSMg01no143_p17.b1 CHROMAT_FILE:
MSMg01no143_p17.b1 PHD_FILE: MSMg01no143_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:41 2005
(655 letters)
>mm_chr3_110209488_110210545
Length = 1058
Score = 1176 bits (608), Expect = 0.0
Identities = 639/650 (98%), Gaps = 3/650 (0%)
Strand = Plus / Plus
Query: 9 gaattcagagtttccttctttataataaatttttaaacatttctcatatggctagtagga 68
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gaattcagagtttcattctttataataaatttttaaacatttctcatatggctagtagga 268
Query: 69 ataaaaaggttactagtgttttgaaaaatgctttggcattgttttataaaattatgtgtt 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ataaaaaggttactagtgttttgaaaaatgctttggcattgttttataaaattatgtgtt 328
Query: 129 aagtttggcacagatattggattcctaatttaactaagagaagaaaatgtatatgaccac 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aagtttggcacagatattggattcctaatttaactaagagaagaaaatgtatatgaccac 388
Query: 189 aagaacgcttatattagagtgcttattttaactttaatcagagcagcctcacaaaggaaa 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aagaacgcttatattagagtgcttattttaactttaatcagagcagcctcacaaaggaaa 448
Query: 249 ttgtattaatgtccatcaatagaagaatgctatagctgactgtggtgtagacacacagag 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ttgtattaatgtccatcaatagaagaatgctatagctgactgtggtgtagacacacagag 508
Query: 309 ggatgctgtgagacaaataagtaatagcaaaaccaaaatactactattatatatgtaaat 368
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 509 ggatgctgtgagacaaataagtgatagcaaaactaaaatactactattatatatgtaaat 568
Query: 369 ggcgaccacagaaaatggaacagaagtaaaaatgtctgtgtttccaatatcatcaggttc 428
|| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 569 ggtgaaaacagaaaatggaacagaagtaaaaatgtctatgtttccaatatcatcaggttc 628
Query: 429 aagaatgaaaaaaaa--tgagttcataattgggggg-agtacaataaaaactgagtggaa 485
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 629 aagaatgaaaaaaaaaatgagttcataattgggggggagtacaataaaaactgagtggaa 688
Query: 486 aagaatatttgtggacaggcaaaaatatggcatattttgttataggcaacaactctatac 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 aagaatatttgtggacaggcaaaaatatggcatattttgttataggcaacaactctatac 748
Query: 546 attaattagttagcatagttaaagtttctaatttttttcatgcatattatacttcaaaaa 605
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 attaattagttagtatagttaaagtttctaatttttttcatgcatattatacttcaaaaa 808
Query: 606 atactactggtggggctggagtgatggctcagtggttatgagcactggct 655
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 atactactggtggggctggagtgatggctcagtggttatgagcactggct 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1058
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1048
Effective search space: 675960
Effective search space used: 675960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_p17.g1 MSMg01no143_p17.g1 CHROMAT_FILE:
MSMg01no143_p17.g1 PHD_FILE: MSMg01no143_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:41 2005
(592 letters)
>mm_chr3_110358117_110359108
Length = 992
Score = 992 bits (513), Expect = 0.0
Identities = 531/537 (98%)
Strand = Plus / Minus
Query: 56 tggaggaagacagaaaagaagttaagaacaatctctaaagtgtgagagattgtaaaatga 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 992 tggaggaagacagaaaagaagttaagaacaatctctaaagtgtgagagattgtaaaatga 933
Query: 116 aattgtcatcatgaatccttgaaacagatacagtgaacatatgctgaaaaggaaagcaat 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932 aattgtcatcatgaatccttgaaacagatacagtgaacatatgctgaaaaggaaagcaat 873
Query: 176 cggaataaaattctatatcagagaactaatattaaaaaagaaaatattaaaataagaaat 235
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 cagaataaaattctatatcagagaactaatattaaaaaagaaaatattaaaataagaaat 813
Query: 236 attttaaaatatttttaaaagaaaaaggataaacatgatactgctgattgaaattgagga 295
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 812 attttaaaatatttttaaaagaaaaaggataaacgtgatactgctgattgaaattgagga 753
Query: 296 ggcagatctaaaaaattattttaggtggaagtatgataaagagaaccctgaatatcacat 355
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 752 ggcagatctaaaaaattattttaggtggaagtatgataaagagaagtttgaatatcacat 693
Query: 356 agagattttttagattataaactaacttgaagaatcttatcattggaaacaacgagtaaa 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 agagattttttagattataaactaacttgaagaatcttatcattggaaacaacgagtaaa 633
Query: 416 aggagtagatcatattttattttggaccaaagaagtttagctgtgccaaccattgttggc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 aggagtagatcatattttattttggaccaaagaagtttagctgtgccaaccattgttggc 573
Query: 476 atatgtggaaacttccatgagtgtgcagagactacagtcgatccagtgaactcgaaacca 535
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 atgtgtggaaacttccatgagtgtgcagagactacagtcgatccagtgaactcgaaacca 513
Query: 536 tttagagcaaatataacaaacactaagctacctgaaatcacacaggcaggtggtaag 592
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tttagagcaaatataacaaacactaagctacctgaaatcacacaggcaggtggtaag 456
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space: 571524
Effective search space used: 571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
