NNNTAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATC
CGCGGAATTCAGTTGTTCATTCTCTCCTCCTGCCATACGGGACCTGGGGA
TGGAACTCAGGTGGTCAATCTTGGCAGCAGGCACTTTTACTACTGAGCCA
TCTATCTTACTAGGCAGTTTGTCTTAGTCAGGGATCCTATTGCTGTGATG
AAACACCATGACCAAAGAGACTTGGGGAGGGAAGGATTTGTTTGGCTATG
TTTCCACATCACAGTTCAGCATCAAAGGAAGTCAGGACTGGATCTCAAAC
AGGGTAGGAAGCTGGAAGCAGGAGCTGATATACAGGCCACGGAGGTGAGT
TGTTTACTGGCTTGTTACTCATGGCCTGCTCAGCCTGCTTTCTTATAGAA
CCAAGACCACCAGACCAGGGATGGCACCACCTATAACAGGCTGGGCCCTC
CCTCATCAATTGCTAATTAAGGAAATGCCCTACAGCCTTGCCTGTAGCCC
AGTCCTGTGGAGGCATTTTCTCAATTGAGGCTCCCTCCTCTCTGATGACT
ATAGCTTGTGTCAAGTTGACAGAAACCGAGCCAGGACACAGTTGTTGTTC
TTTTCCTTATCTTATAATGTAAATACCATGGAAGGACTTTCCTGGTTTGT
TTATCTTTGTGTACCTTGAATCAGTGATGGGCACAGACTGTTCAATATAC
ATTAAGTTAG

CTCTCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGGAACAGAAAGAGAGGAGGG
GAAGAGGTAAGAAGAGAGAAGAGGGATGAAAGAGAGGAGAAGACCTAGTC
TATGATGTTCTTTTTCCTTCTTCTTCTTTTTTTTCCCCTCCCTTTTCTCC
TTTCTTTCTCTTCCCTCCTTCCCCCTTCTCTCTCCCCTCTCTCCCCTCTT
TTTTTCTCTCCTCCCCCCCCCTTCTTCCTCTCCCTTCCTCTTTCTTCTCC
CTCCCTTTTTTTTTCCCCCCTTTCCCCCTTTCGCTCTCTCCCCTTCTTTT
TTCCTCTTTTTCCTCCCCTTCTCCTCCTCCCCTCTTCTTTTTTCCCTCCT
CCTTTCTTTCTTTGTCTCTCCTTCCTCTTTTTTCCCTCTCCTTTCGTCGG
TCCGTTCCCCCCCTTCTCTTCTTCTTTCTTCCTCTTTCTTCCCCTTCTTC
TTCCTTCGCCCCTCTTCTCCTTCTTTCTTTTCGTCTCTTCCGCTCCTTTC
TTCTCCTCCTTTTCCCTCTCTCTTTTTCTCTCTCTTTCTCCTCTTTTCCT
TCCCTTTTCCTTTTTCTCTTCTTCCCTTCCCTTATTTCTCTTTTCTTCTC
TTTCGCTTCTCCCTCTTCCTCTCTTTCCCCTTTTCTTCGTCTTCTCCCTT
CTCCTCCTTCTTTCTTCCCTTTCTTCCCTACTCCTTTCCTTCCTCTCTTT
TTCGCTCTCGTTGTCTCTCTTCTTTCTCCTCCCTCTCTCCCCCTTTTCTC
CCTCCCTTTTTTCCCCTCTCTCTTCTTCTTTCCCG

Query= MSMg01no144_b05.b1 MSMg01no144_b05.b1 CHROMAT_FILE:
MSMg01no144_b05.b1 PHD_FILE: MSMg01no144_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:48 2005
         (655 letters)



>mm_chr3_97785179_97786233
          Length = 1055

 Score = 1251 bits (647), Expect = 0.0
 Identities = 650/651 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagttgttcattctctcctcctgccatacgggacctggggatggaactcaggtgg 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 205 gaattcagttgttcattctctcctcctgccatacgggacctggggatggaactcaggtag 264

                                                                       
Query: 65  tcaatcttggcagcaggcacttttactactgagccatctatcttactaggcagtttgtct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcaatcttggcagcaggcacttttactactgagccatctatcttactaggcagtttgtct 324

                                                                       
Query: 125 tagtcagggatcctattgctgtgatgaaacaccatgaccaaagagacttggggagggaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tagtcagggatcctattgctgtgatgaaacaccatgaccaaagagacttggggagggaag 384

                                                                       
Query: 185 gatttgtttggctatgtttccacatcacagttcagcatcaaaggaagtcaggactggatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gatttgtttggctatgtttccacatcacagttcagcatcaaaggaagtcaggactggatc 444

                                                                       
Query: 245 tcaaacagggtaggaagctggaagcaggagctgatatacaggccacggaggtgagttgtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcaaacagggtaggaagctggaagcaggagctgatatacaggccacggaggtgagttgtt 504

                                                                       
Query: 305 tactggcttgttactcatggcctgctcagcctgctttcttatagaaccaagaccaccaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tactggcttgttactcatggcctgctcagcctgctttcttatagaaccaagaccaccaga 564

                                                                       
Query: 365 ccagggatggcaccacctataacaggctgggccctccctcatcaattgctaattaaggaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccagggatggcaccacctataacaggctgggccctccctcatcaattgctaattaaggaa 624

                                                                       
Query: 425 atgccctacagccttgcctgtagcccagtcctgtggaggcattttctcaattgaggctcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atgccctacagccttgcctgtagcccagtcctgtggaggcattttctcaattgaggctcc 684

                                                                       
Query: 485 ctcctctctgatgactatagcttgtgtcaagttgacagaaaccgagccaggacacagttg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctcctctctgatgactatagcttgtgtcaagttgacagaaaccgagccaggacacagttg 744

                                                                       
Query: 545 ttgttcttttccttatcttataatgtaaataccatggaaggactttcctggtttgtttat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttgttcttttccttatcttataatgtaaataccatggaaggactttcctggtttgtttat 804

                                                              
Query: 605 ctttgtgtaccttgaatcagtgatgggcacagactgttcaatatacattaa 655
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ctttgtgtaccttgaatcagtgatgggcacagactgttcaatatacattaa 855


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)