BAC Information

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BAC

Clone NameMSMg01-144B19
Chromosome3 (Build37)
Map Location 106,629,783 - 106,630,442
singlet/doubletsinglet
Overlap genenone
Upstream geneAdora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266
Downstream geneKcna3, AI504432, Kcna2, Kcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik, Ahcyl1, Csf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144B19.T7 (MSMg01no144_b19.b1)MSMg01-144B19.TJ (MSMg01no144_b19.g1)
ACCAG348270AG348271
length732739
length of high quality
(start - end)		676 (41 - 716)647 (74 - 720)
definitionCHROMAT_FILE: MSMg01no144_b19.b1 PHD_FILE: MSMg01no144_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:51 2005CHROMAT_FILE: MSMg01no144_b19.g1 PHD_FILE: MSMg01no144_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATAATTTGCGGCGCTATACGACTCCTATAGTTCGAGAATCCGCGGAATT
CTGTGCTAAACCCTCTGGTCCTGGGTTTGCTTTTGTTAGATGAATTTTAA
TTTCTGCTCAATATATAAGGAATATACCTCAACATGAAGCATGTATTCAT
ATCCTCTTTGAATTATTAGATTAAGTTCATGATTGCTACTTTGAAATCAT
TGTCTTATATGTCATCTAAATTGCTTTTTTTTTTGGAAGACTTTACAATG
AGAGTACCAATGTTTGGTTGAGACTTGTTTTTATTATTTATATTTGTGTA
TTTATACCTAATCATCTGGAGTTAGATTGTTTTGCTTCTTGGTATAAAAA
TTGTGCCTTTATAATTACTGTTACTCAGTGTTGTTGAGTGGTTACCAGAT
GTAATAATAGACTTACCCCTAGCAGGTTGACATTGATGACTACTTTTTTC
CTCTGTTAGCATGTGTTGAACCTAGCAGCACCATGATCACCAATAAATAG
TGGTTAAACTTGTTCAACAGTAGCTCAGCTACTCCTTGTTTAATGATATA
AGTGGTGTTTTTAGTAATAGGACATTACTGTCAAATTGTGGAGTGTATCC
AATAGCATAATCAATAGCTTATAATATTTTGGGTTTATTTTGGCCAATGA
CTCAATAAGATGTAACCCATTCCTTACATTAGGGTTTTACTTGGTAGTAT
GCTTAGTTGGGGCATTCTCTCCCCATTATAGA

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTAAACCAGATAAACAGCTTCAGCGCA
GTAGCTGCATATAAAATTAACTCAAACAAATCAGTGGCCTTTCTCTACAA
AAGGATAAATAGGCAGAGAAAGAAATTAGGGAGACAACACCCTTACAATA
GTAAAAAAAAAAAAAATACCTTGCTGTGACTCTAACTGAGGAACTGAAAG
ATCTGTATGACAAGAACTTCAAGTTTCTGAACAAAGAAATTGAAGTTCTC
AGGAGATGGAAAGATCTCACGTGCTCATGGAATGGCAGGATTAATATAGT
AAAAATGGCTATCCTGCCGAAAGCAATCTACAGATTCAATGCAATCCCCA
TCGAAATTCCAACTCAATTCTTCACTGAATTTGCAAATTCATCTGGAGTA
ACAAAAAAACCTAGGATAGCAAAAACTATTCTCAACAATAAAAGAACTTC
TTGTGGAATCACCATGCATGACCTCAAGCTGTACTACAGAGAAATTGTGA
TAAAAACTGCATGGAACTGGTACAGCGACAGACAGGTAGATCAATGGAAT
AGAATTGAAGACCCAGAAATGAACCTACACACCTATGGTTACTTGATCTT
TCACAAAGGAGCTAAAACCATCCAGCAGAAAGAAGACAGTATCTTCAATA
TATGGTACTGGATCAACTGGTGGTTAGAATGTAGAAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_b19.b1 MSMg01no144_b19.b1 CHROMAT_FILE:
MSMg01no144_b19.b1 PHD_FILE: MSMg01no144_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:51 2005
         (676 letters)



>mm_chr3_106629783_106630862
          Length = 1080

 Score = 1189 bits (615), Expect = 0.0
 Identities = 648/661 (98%), Gaps = 6/661 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctgtgct-aaaccctctggtcctgggtttgcttttgttagatgaattttaatttc 64
           |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gaattctgtgctaaaaccatctggtcctgggtttgcttttgttagatgaattttaatttc 601

                                                                       
Query: 65  tgctcaatatataaggaatatacctcaacatgaagcatgtattcatatcctctttgaatt 124
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 600 tgctcaatatataaggaatatacctcaacatgaagcatgtatccatatcctctttgaatt 541

                                                                       
Query: 125 attagattaagttcatgattgctactttgaaatcattgtcttatatgtcatctaaattgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 attagattaagttcatgattgctactttgaaatcattgtcttatatgtcatctaaattgc 481

                                                                       
Query: 185 ----ttttttttttggaagactttacaatgagagtaccaatgtttggttgagacttgttt 240
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ttttttttttttttggaagactttacaatgagagtaccaatgtttggttgagacttgttt 421

                                                                       
Query: 241 ttattatttatatttgtgtatttatacctaatcatctggagttagattgttttgcttctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ttattatttatatttgtgtatttatacctaatcatctggagttagattgttttgcttctt 361

                                                                       
Query: 301 ggtataaaaattgtgcctttataattactgttactcagtgttgttgagtggttaccagat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ggtataaaaattgtgcctttataattactgttactcagtgttgttgagtggttaccagat 301

                                                                       
Query: 361 gtaataatagacttacccctagcaggttgacattgatgactacttttttcctctgttagc 420
           |||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gtaataataggcttaatcctagcaggttgacattgatgactacttttttcctctgttagc 241

                                                                       
Query: 421 atgtgttgaacctagcagcaccatgatcaccaataaatagtggttaaacttgttcaacag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 atgtgttgaacctagcagcaccatgatcaccaataaatagtggttaaacttgttcaacag 181

                                                                       
Query: 481 tagctcagctactccttgtttaatgatataagtggtgtttttagtaataggacattactg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tagctcagctactccttgtttaatgatataagtggtgtttttagtaataggacattactg 121

                                                                       
Query: 541 tcaaattgtggagtgtatccaatagcataatcaatagcttataatattttgggtttattt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 120 tcaaattgtggagtgtatccaatagcataatcaatagcttataatattttgtgtttattt 61

                                                                       
Query: 601 tggccaatgactcaataagatgtaacccattccttacattagggttttacttggtagtat 660
           ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 60  tggccaatgactcaataagatgtaa-ccattccttaaattagggttttacttggtagtat 2

            
Query: 661 g 661
           |
Sbjct: 1   g 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1080
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1070
Effective search space:   712620
Effective search space used:   712620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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