BAC Information

Click to search

BAC

Clone NameMSMg01-144H19
Chromosome3 (Build37)
Map Location 142,078,290 - 142,078,648
singlet/doubletsinglet
Overlap genenone
Upstream geneUnc5c, LOC100039923, Bmpr1b, Gabarapl2-ps3, Pdlim5
Downstream geneGbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2, LOC100040053, LOC100039883, 1700001N15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144H19.T7 (MSMg01no144_h19.b1)MSMg01-144H19.TJ (MSMg01no144_h19.g1)
ACCAG348547AG348548
length730730
length of high quality
(start - end)
376 (46 - 421)593 (75 - 667)
definitionCHROMAT_FILE: MSMg01no144_h19.b1 PHD_FILE: MSMg01no144_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:20 2005CHROMAT_FILE: MSMg01no144_h19.g1 PHD_FILE: MSMg01no144_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCG
GAATTCACTTACACAAACTCAAATATTGTGGCTTAAGATAGATGCTAAGA
ACCTTTAAAATGAAGCTTACAAAACCGAGGTTCTATGGCATGTTTAGGTG
AAGACGAATTTGGCTTTATTTTCTTTGGAGAGTTTCTTTACGTGCTTGTA
TTTTTAGGCATCGCTGCAGAGTGGAAAGAACACTGGACCTGACGTCAGGA
GCTCTGGGTTCTATTTCTGACTGTTGATCTTCTGGGAAGCCATGGGGGAG
ACACGTTATTAAAGAGAGCATTACTTACTTGAGTCACAGAGCTTAGCAGA
GGGCTACCAGCTCAGTGGAGGACAGTGTTCATAGCAGAGGGTTCCTCAGA
ACTCTGTCTCCTCTTACGTCACCACCACGTAGCTCTTCCTTTTTGGCTTA
AGGACCTTTGGAGGGAGGTGTAGAGGTATTATTACATTAATATTGAAAGG
AAATGGAAAAAGGGCCCTTGCAATGTTGATAATAATTGGCTACTAATTAA
ATTATTATTCTGAATAATAACTAATATAAATGATTATCTCGAGAGAAAGA
GATGATGATTGGAGACTTACTGCTACTTCCAGACACTTGCAAACTTTCAC
CTCCACAATGACTCTGGGGGACCTCCCACCAACAATAATACTGCCTCTGA
ACCCCATTCTTGCCTCAGATCGTCTTTTCT
CCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAAAATTGGGCATAGTACTACCAGAGGATCCA
GCATTACCTCTCCTGTGCATATATCCAGAAGATGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATGCCCACAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGT
GGATATTAGCCCCAAACCTAGGATTCCCAAGATATAAGATACAATTTGCT
AAACACATGAAACTCAAGAAGAATGAAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_h19.b1 MSMg01no144_h19.b1 CHROMAT_FILE:
MSMg01no144_h19.b1 PHD_FILE: MSMg01no144_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:20 2005
         (376 letters)



>mm_chr3_142078288_142079063
          Length = 776

 Score =  679 bits (351), Expect = 0.0
 Identities = 357/359 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcacttacacaaactcaaatattgtggcttaagatagatgctaagaacctttaaaa 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gaattcacttacacaaactcaaatattgtggcttaagatagatgctaagaacctttaaaa 302

                                                                       
Query: 66  tgaagcttacaaaaccgaggttctatggcatgtttaggtgaagacgaatttggctttatt 125
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 301 tgaagcttacaaaaccgaggttctatggcatgtttaggtgaagatgaatttggctttctt 242

                                                                       
Query: 126 ttctttggagagtttctttacgtgcttgtatttttaggcatcgctgcagagtggaaagaa 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttctttggagagtttctttacgtgcttgtatttttaggcatcgctgcagagtggaaagaa 182

                                                                       
Query: 186 cactggacctgacgtcaggagctctgggttctatttctgactgttgatcttctgggaagc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cactggacctgacgtcaggagctctgggttctatttctgactgttgatcttctgggaagc 122

                                                                       
Query: 246 catgggggagacacgttattaaagagagcattacttacttgagtcacagagcttagcaga 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 catgggggagacacgttattaaagagagcattacttacttgagtcacagagcttagcaga 62

                                                                      
Query: 306 gggctaccagctcagtggaggacagtgttcatagcagagggttcctcagaactctgtct 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gggctaccagctcagtggaggacagtgttcatagcagagggttcctcagaactctgtct 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)