NNNNAATCTATAATTGCGGCGCTAAACGACTCCTATAGTTCGAGAATCCG
CGGAATTCTTTGTTTATTTCCGAACCCATTTTTAATGAGGTTATTTGATT
TTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTAGATATTAGTCTC
CTATCTGATTTAGGATAGGTAATGATCCTTTCCCAATCTGTTGGTGACCT
TTTTGTCTTATTGACAGTGTCTTTTGTCTTATAGAAGCTTTGCAGTTTTA
TGAGGTCCCATTTGTCGATTTTTGATCTTACAGCACAAGCCATTGCTATT
CTATTCAGGAAGTTTTCCTCTGTGCCCTTATCTTAGAGGCTTTCCCCCAC
TTTCTCCTCTATAAGTTTCACTGTCTCTGGTTTTATTTGGAGTTCCTTGA
TCCACTTAGTTTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTTGC
ATTCTTCTACATGATAACTGCCAGTTGTGCTAGCACCATTTGTTGAAAAT
GCTGTCTTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAG
TGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTG
GTCTACTTGTCTGTCCCAATACCAGTACAATGCAGTTTTTATCACAATTG
CTCTGTAGTACAGCTTTAGGTCAGGCATGGTGATTCCATCAGCAGATGCT
GGTGG

NNNCCCATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCATATTTAGAATCTTTTGTTGTGTT
CTGTGAATCAAAACTATTCTGTTCTGTGAATCAAAACTATTGTTCTGTGA
ATCAAAACTATTGGTTAAATACAGTTGGCTACAGCCAGTTACTGGAAGGA
CTAGAGGTAGGTGGGTTTTTACTTACCTGGTTAGAGGTGGAGAAGAGAGA
GGAGAAAGGAAAGGGGAGAGACCATGGAGGGGAGGAGAAAGAATGAGAAG
AGAGAAAGATAGGAAAGGGGAGATAGTCCATGAACACAGGGCCAGGAAAT
GCAAAATACTTGGGGTACAATGCTGGGGAGGTAGCCAGAACAGGAGTTAG
AAGAGTATATTAGGGGTGGCCCCCCAGTAATCCTCAAAGCCAGATGAAAT
AACCCATAGTTTGGGTCTTGCTACTTGTAAGCTAGTCAAGGATAAGCTTA
AAGTGGTTGTACTAAACAAACCTACACATTCTCACACTATTCTCCTTCTC
CATATCATCTCATGTATCCTCTGTGTGACATGACTCTCTCCATTGACAAG
GTTCCCAACAGAAACTTCTGAAACTTTTCTGAAATCTTCTCAGGTATTCC
TCCTAGCACTTTGACAGCAGCACTGTTAACTAAGCTGTTGCTGACAGATT
CCGTAC

Query= MSMg01no144_j05.g1 MSMg01no144_j05.g1 CHROMAT_FILE:
MSMg01no144_j05.g1 PHD_FILE: MSMg01no144_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:26 2005
         (568 letters)



>mm_chr3_154980545_154981512
          Length = 968

 Score =  849 bits (439), Expect = 0.0
 Identities = 485/503 (96%), Gaps = 6/503 (1%)
 Strand = Plus / Plus

                                                                       
Query: 66  ttgttctgtgaatcaaaactattggttaaatacagttggctacagccagttactggaagg 125
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 272 ttgttctgtgaatcaaaactattggttaaatacagttggctatagccagttactggaagg 331

                                                                       
Query: 126 actagaggtaggtgggtttttacttacctggttagaggtggagaagagagaggagaaagg 185
           |||||||||||||||||||||||||||||||||||||||||||||||||||     ||||
Sbjct: 332 actagaggtaggtgggtttttacttacctggttagaggtggagaagagaga-----aagg 386

                                                                       
Query: 186 aaaggggagagaccatggaggggaggagaaagaatgagaagagagaaagataggaaaggg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aaaggggagagaccatggaggggaggagaaagaatgagaagagagaaagataggaaaggg 446

                                                                       
Query: 246 gagatagtccatgaacacagggccaggaaatgcaaaatacttggggtacaatgctgggga 305
           |||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||
Sbjct: 447 gagatagtccatgaacacacagccaggaaatgcaaaatatttggggtacaatgctgggga 506

                                                                       
Query: 306 ggtagccagaacaggagttagaagagtatattaggggtggccccccagtaatcctcaaag 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ggtagccagaacaggagttagaagagtatattaggggtggccccccagtaatcctcaaag 566

                                                                       
Query: 366 ccagatgaaataacccatagtttgggtcttgctacttgtaagctagtcaaggataagctt 425
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 567 ccagatgaaataacccatagtttgggtcttgctacttgta-gctagtcaaggataagctt 625

                                                                       
Query: 426 aaagtggttgtactaaacaaacctacacattctcacactattctccttctccatatcatc 485
           |||||||||||||||| ||||| |||||||||||||||| ||| ||||||||||||||||
Sbjct: 626 aaagtggttgtactaagcaaacttacacattctcacactcttccccttctccatatcatc 685

                                                                       
Query: 486 tcatgtatcctctgtgtgacatgactctctccattgacaaggttcccaacagaaacttct 545
           |||||| |||||||| |||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 686 tcatgtctcctctgtatgacatgactctctccattgacaaagttcccaatagaaacttct 745

                                  
Query: 546 gaaacttttctgaaatcttctca 568
           |||||||||||||||||||||||
Sbjct: 746 gaaacttttctgaaatcttctca 768


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)