BAC Information

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BAC

Clone NameMSMg01-145A13
Chromosome3 (Build37)
Map Location 65,315,045 - 65,315,587
singlet/doubletsinglet
Overlap geneEG667093
Upstream gene4930518C23Rik, EG667069, LOC100040918, 4933425M15Rik, LOC670110, Kcnab1, Ssr3, EG433604, LOC100041083
Downstream gene4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866, Ccnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145A13.T7 (MSMg01no145_a13.b1)MSMg01-145A13.TJ (MSMg01no145_a13.g1)
ACCAG348943AG348944
length712760
length of high quality
(start - end)
666 (47 - 712)228 (74 - 301)
definitionCHROMAT_FILE: MSMg01no145_a13.b1 PHD_FILE: MSMg01no145_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:01 2005CHROMAT_FILE: MSMg01no145_a13.g1 PHD_FILE: MSMg01no145_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTTTAATTCCGCACTACAGAATACAATCTCTATCATACTATTT
AAACTAGGACACTGCAGTAGCAAGATCCAGAATGTGACAGGGAGAATATC
TGATCCTAATGGAATGGACTAGGAGGTCACTGAGGATGGCAGGGTCAGGG
TATAAGAGGACATGTTTGTCTCTCTTTGTAGATGATGAAGTCTTCAGTCC
TGGGAAAGAGTGAAATAGGGAGAGTGTGAGCCATGAGTCCAAGTCAGTGG
ATTTCAAACTTTGGAGGGTATCATCTCAAAAAACAGTAACGGCTTACAGA
GAAGTGGAACCACTGAAGGAAGACAGAGCCTACACTTCTGTATATTTTTG
CCATGTTCTCAGGTGATTTCGAAATCTAAAACAAAGTTTGAAATCCATTC
CCTAAATATTAGTGGAGAGAAGTAACTGATAACCAGTCCATAACAAAGTC
TACAGAAGAGAGGGAGAGAAAGTAGTCGAGAGGCCGACGGAAGCAAACTT
CTGTTAAAAGAGGGCTAGGTTGCCATGGCCCAGAAATAGTAATGAGGACA
ACTGGCTCCCTTAACTGTTTATTTTCCTTTTTGTGATAATGAGTGTTATA
GAATTATGACTCTAAAAGAGATACATTGAAAGTCCTAATGATATGTATTT
CAGAATGTGACC
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAATCCCCAGCAATCACATAAAGGTTG
CCAGGCATGCCCATGCGTGCCTATAACAACAGACTCTTGGAGAAGAGACA
GGCAGTTCTCAGAAGCTGAGCAGCCTGATCAAATGGAGGAGGCTCACGTT
CAGTGAAAAACCTTATCTCAAGGGAACAACACAGGGAGAGTGACAGAACA
GGACACCAGATGTCCTCCTCTGGCCTCTGCATATATGTTCACACACGTGG
GTATGCCCCCTTTCCAGACTCCCTCTCTTTGTNAATAAATATTATAAATA
AATGAATAAATTGCTTGATCCCCATGATTTATCAAATCCATTGCAATAAA
GCAAAAGAAAGGGCCCTTCCCACCTGAAGAATCCGTATTAGGTCCTTTGT
GCTGAACTCTAGGAAAAAACCCTCCTCCTCCCCCCCCNGGGCACCAAAAA
GCCCCGGGGAAGGGGCCCCCTCCTGGGACTTTTGTTTTCTTTCCCGGGGG
GTGGGGGGGGGGGGGGTTCTACCTTGTTATTAAGAAAAAAATTCTTCTCC
TCTAAAAATTATCGGGCTTTAATACCCTTCTTGGTTGAAAACNTTCCAAT
AAATAAGTGAAATAAATCTATAATAAACACACACAAACACTTCCTTTTTT
CTTNTNNTTATTCCCTAATCCCACCAATGAAGCTNTTTTTTTNTTGCACA
AATACTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_a13.b1 MSMg01no145_a13.b1 CHROMAT_FILE:
MSMg01no145_a13.b1 PHD_FILE: MSMg01no145_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:01 2005
         (666 letters)



>mm_chr3_65314841_65315905
          Length = 1065

 Score =  967 bits (500), Expect = 0.0
 Identities = 533/544 (97%), Gaps = 1/544 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattttaattccgcactacagaatacaatctctatcatactatttaaactaggac 64
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 747 gaattcattttaattctgcactacagaatacaatctctatcatactatttaaactaagac 688

                                                                       
Query: 65  actgcagtagcaagatccagaatgtgacagggagaatatctgatcctaatggaatggact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 actgcagtagcaagatccagaatgtgacagggagaatatctgatcctaatggaatggact 628

                                                                       
Query: 125 aggaggtcactgaggatggcagggtcagggtataagaggacatgtttgtctctctttgta 184
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 627 aggaggtcactgaggatggcagggtcagggtataagaggacgtgtttgtctctctttgta 568

                                                                       
Query: 185 gatgatgaagtcttcagtcctgggaaagagtgaaatagggagagtgtgagccatgagtcc 244
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gatgatgaagtcttcagccctgggaaagagtgaaatagggagagtgtgagccatgagtcc 508

                                                                       
Query: 245 aagtcagtggatttcaaactttggagggtatcatctcaaaaaacagtaacggcttacaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 507 aagtcagtggatttcaaactttggagggtatcatctcaaaaaacagtaacggcttgcaga 448

                                                                       
Query: 305 gaagtggaaccactgaaggaagacagagcctacacttctgtatatttttgccatgttctc 364
           ||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gaagtgggaccgctgaagaaagacagagcctacacttctgtatatttttgccatgttctc 388

                                                                       
Query: 365 aggtgatttcgaaatctaaaacaaagtttgaaatccattccctaaatattagtggagaga 424
           ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 387 aggtgattt-gaaatctaaaacaaagtttgaaatccactccctaaatattagtggagaga 329

                                                                       
Query: 425 agtaactgataaccagtccataacaaagtctacagaagagagggagagaaagtagtcgag 484
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aataactgataaccagtccataacaaagtctacagaagagagggagagaaagtagtcgag 269

                                                                       
Query: 485 aggccgacggaagcaaacttctgttaaaagagggctaggttgccatggcccagaaatagt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aggccgacggaagcaaacttctgttaaaagagggctaggttgccatggcccagaaatagt 209

               
Query: 545 aatg 548
           ||||
Sbjct: 208 aatg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1065
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1055
Effective search space:   692080
Effective search space used:   692080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)