BAC Information

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BAC

Clone NameMSMg01-145L01
Chromosome3 (Build37)
Map Location 72,742,882 - 72,743,073
singlet/doubletsinglet
Overlap gene2010204N08Rik
Upstream geneLOC100041459
Downstream geneSlitrk3, Bche, LOC667425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145L01.T7 (MSMg01no145_l01.b1)MSMg01-145L01.TJ (MSMg01no145_l01.g1)
ACCAG349426AG349427
length705683
length of high quality
(start - end)
513 (74 - 586)195 (111 - 305)
definitionCHROMAT_FILE: MSMg01no145_l01.b1 PHD_FILE: MSMg01no145_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:51 2005CHROMAT_FILE: MSMg01no145_l01.g1 PHD_FILE: MSMg01no145_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXCTATTTTCAGAGATCCGCGG
AATTCTGTGGTTTTGCAGAAAGGATGTCACAATACATGGTTTCTTAGAGT
TTCTTCATAATCACTCAAAAATCTCCTCACTATTGTTTGATTATGTCCCA
ACAATGGCAGAAATCTGGAATTAAAACGTTAGGAACTCAAACAGGAAGCT
TAGCTGTAAGCCTCACCAATAGAATAAGAAAGATGGAATAGAGAATCCCA
GGCAATGAAGATGAGGTAGAAGAAATAGATATTGTAGTCAAAGACAATTT
TAAATCTAAAAATCTCCACTGACAAAATCTAGGAAATAAGACCAAATATA
CAAATGATTGTAATACAGGAAGAAGAATCCAAGATCAAAGGCACAGAAAA
TATTTTTTTTAAATGAGTAGAAAATAATCTGTAATCTAAAGAAGAAAATG
CATAGCAAGGTACAAGAAGGATACGTAAAACAAATAGATTGAGCCAGGAA
AGAATTCCATTTGGCAAATAATAAGCAATGCACTAAACACAAGGGACAAA
GAAAAAGATAAATCTTGCAAGGATAAAAATTTCAAGACCAATTAGAAAAA
CAACAGATATGAGCAAGACCTTGATAGCTGGAAGGAACTGGAAAGATATT
TTACAAATAGTAGCAGACTGTATTTTGCAGCCCTGAGTATTCTACCCCAG
TGAAT
CCATACTAGGGAGCCTGGCGCCGCTGTTTCGAATTGGGNGAACNAAGAAG
GTTACGGCATCGGAAGACACTCAGGCCTGGCTTGAGGGGCGNCATGAGGC
TATTGGCCCATTATGCCTGTACCTGAGCACAAATTCAGGTACAGGCATGC
TGATGTAAACAGGAAAGGACCTCAGATTATTTGGCATATGTTTTGAGAAC
ATAAAATTGGAGACAGTCTAAAGAAAACTAAGAGTTTGTTAGCTTATCTG
GCTATTTTTCACCTCTTTAAAACTGTGTATTTAAGTGAAAAGCGCATCCT
TATTAGTGATTTTAANTAAAANACAACTTAAGATACAAAGCCTAAAACAT
TCCCGCCTAAAGAGGTTATATTTGGGTCATTTTAAAATTTTTTCATAGAA
GAGTTCAAATTCAAACAACTTGTTTTAAATAATTATTAGAATAGTCTAAT
TTTAAAGCTTATTTACATATTCTCTTCTTTTTATTTCTTTTGCTATGGTA
TAGGAACAAGATCCTGCCTTTTGGGGAGCAGACTCTCTTTTGGTAAACCA
TCAAGGCACTACCTAACCCTCCGCTACACTTTACTTCCCTTCTTCTACAC
TCTGTTCTATAGAAGCCACCCGTTTGGTGAGACAGCTGCAATTTCCTTTT
CTTCATGAATGACTATTGAGAAATATAAGTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_l01.g1 MSMg01no145_l01.g1 CHROMAT_FILE:
MSMg01no145_l01.g1 PHD_FILE: MSMg01no145_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:51 2005
         (195 letters)



>mm_chr3_72742682_72743277
          Length = 596

 Score =  317 bits (164), Expect = 2e-91
 Identities = 185/192 (96%), Gaps = 1/192 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatgcc-tgtacctgagcacaaattcaggtacaggcatgctgatgtaaacaggaaagga 59
           ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 392 ttatgccatgtacctgagcacaaattcaggtacaggcatgctgatgtaaactggaaagga 333

                                                                       
Query: 60  cctcagattatttggcatatgttttgagaacataaaattggagacagtctaaagaaaact 119
           ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 332 cctcagattatttggcaaatattttgagaacataaaattggagacagtctaaagaaaact 273

                                                                       
Query: 120 aagagtttgttagcttatctggctatttttcacctctttaaaactgtgtatttaagtgaa 179
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aagagtttgaaagcttatctggctatttttcacctctttaaaactgtgtatttaagtgaa 213

                       
Query: 180 aagcgcatcctt 191
           ||||| ||||||
Sbjct: 212 aagcgtatcctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 596
Length adjustment: 8
Effective length of query: 187
Effective length of database: 588
Effective search space:   109956
Effective search space used:   109956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)