BAC Information

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BAC

Clone NameMSMg01-145O14
Chromosome3 (Build37)
Map Location 53,634,818 - 53,635,129
singlet/doubletsinglet
Overlap genenone
Upstream geneCog6, Lhfp, LOC100039808, LOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155
Downstream geneUfm1, EG666444, LOC100039937, Trpc4, Postn, LOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145O14.T7 (MSMg01no145_o14.b1)MSMg01-145O14.TJ (MSMg01no145_o14.g1)
ACCAG349589AG349590
length709705
length of high quality
(start - end)
492 (46 - 537)590 (71 - 660)
definitionCHROMAT_FILE: MSMg01no145_o14.b1 PHD_FILE: MSMg01no145_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:08 2005CHROMAT_FILE: MSMg01no145_o14.g1 PHD_FILE: MSMg01no145_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAGAATCCGCGG
AATTCCAAAGGTTTCCGAGTAGAGGGGACATGTCCTTCATATGCTCAAAT
GAAAACCTGTAGTTTGTTACAGAGCTGTTTAACGGTGGAGAGTTTGTGTG
GGAAGCCACATGTGCCGTTGCAGAGTGGCACTGACTACTGCTGGCCACCA
CGCATAAGTTTGGACAAACAACCAATGTGTACATATGCAGTAAAGTTTTT
TGCAAAGACACTGCCTGGCCCGGGCATGATAATGAGGTTCTGTAAGGTAC
TGAGAGTATAACCAATCAGATGTGATACATGCAAATGAGGTATGATAATG
AGGTTCTGTAAGGTACTGAGAGTATAACCAATCAGATGTGAGACATGCAA
ATGAGGTATGATAATGACCCCCTGTAAGGTACTGAGAGAGAGTAACCAAT
CGGATGTGAGACATGCAAATGAGGTATGATAATGAAGCTCTGTGAGGTAC
TGAGAGAGAGTAGCCAATCAGATGAGGAACATGCAAATGAGGCGTAGTGC
ATAACCAATCCGGGTGTAAGACACGCCTCTCCTAGGCCTATAAAAGCAGC
ACCAGTTCTGGTCTCGGGGTCTTTTCCCCTCTACAATCAAGCTCTCCCAA
TAAACGTGTGCAGAAGGATCCTGTTGCAGCGTCGTTTCTTCCTGACCAGT
CGAGCGCAC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTTGCAGTGTTAAGAGAAAATATGTGCTT
GCTGTCTACTAAAAATCAAAGGTCTGGGTCAAGGGATGCTGGGTCGTAGG
ATAATCAAAAGAAAGCCTGGGATAAATAACTGAACTGATATGTAAATAAA
AAGCTGGACTTTTGATCGGCGTGGGATGCGCTAGGAGAAAGTAAGAGCAG
TTCTGTTTTAGACTTTTCTCTAGAGAAAGCTGAGCTGTCAGGAGATCTCT
GGAGGCCAAAAACAGCTCTTCTAGAATTTTTTCTAACAGGATTTTTTGAC
TTGGTTGGAAGATCCAATAATTTTTATAGCAGCTTTTCTGACTTTGGTCA
GAAAAACCCATGAGCTATCTAGATAGCTTTTAGAATTTTTACTAGCAGAG
AAAGCTGTCTCATTCAGAGAATTTTTTAGAATAGCTGTCTAGAGCAGAGC
AGAAAACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGACT
GTGTTTCTCTTTATATACAAGCTTAGCTTTGCATTTGTTACTTCAGATAA
ACTATTTCAGACTAAAGACTAGATGATCTCTCATTTAGAAGGATTATATT
TTTGTGCTTCAAGGCAAACAGCATCTCAGGTGGTGTCAGAAATGTGCAGA
ACCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_o14.g1 MSMg01no145_o14.g1 CHROMAT_FILE:
MSMg01no145_o14.g1 PHD_FILE: MSMg01no145_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:08 2005
         (590 letters)



>mm_chr3_53634140_53635129
          Length = 990

 Score =  499 bits (258), Expect = e-145
 Identities = 288/312 (92%), Gaps = 22/312 (7%)
 Strand = Plus / Minus

                                                                       
Query: 301 tttttatagcagcttttctgactttggtcagaaaaacccatgagctatctagatagcttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 tttttatagcagcttttctgactttggtcagaaaaacccatgagctatctagatagcttt 931

                                                                       
Query: 361 tagaatttttactagcagagaaagctgtctcattcagagaattttttagaatagctgtct 420
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 930 tagaatttttactagcagagaaagctgtctcacccagagaattttttagaatagctgtct 871

                                                                       
Query: 421 agagcagagcagaaaacacacacacacacacacacaca---------------------- 458
           ||||||||||||||||||||||||||||||||||||||                      
Sbjct: 870 agagcagagcagaaaacacacacacacacacacacacacacagagagagagagagaggga 811

                                                                       
Query: 459 gagagagagagagagagagactgtgtttctctttatatacaagcttagctttgcatttgt 518
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 gagagagagagagagagagactgtgtttctctttatatacaagcttagctttgcatttgt 751

                                                                       
Query: 519 tacttcagataaactatttcagactaaagactagatgatctctcatttagaaggattata 578
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 tacttcagataaactatttcagactaaagactagatgatctctcatttagaaggattata 691

                       
Query: 579 tttttgtgcttc 590
           ||||||||||||
Sbjct: 690 tttttgtgcttc 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)