Query= MSMg01no146_a12.b1 MSMg01no146_a12.b1 CHROMAT_FILE:
MSMg01no146_a12.b1 PHD_FILE: MSMg01no146_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:19 2005
(538 letters)
>mm_chr3_84824116_84825053
Length = 938
Score = 934 bits (483), Expect = 0.0
Identities = 521/539 (96%), Gaps = 10/539 (1%)
Strand = Plus / Plus
Query: 1 atgcaagcatcacccttccacctactccaccatccacacatttgaataaccaccaatgat 60
|||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||
Sbjct: 201 atgcaagcatcacccttccacctactccaccatcaacacatttgaataagtaacaatgat 260
Query: 61 aataccatgcactaaaaaaatgctatttttaaaaaaacttaaatgtacttctgtcaaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataccatgcactaaaaaaatgctatttttaaaaaaacttaaatgtacttctgtcaaaag 320
Query: 121 tctggtttttcagaaataattgctgtaggccagataaagatttgcataggattcctaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctggtttttcagaaataattgctgtaggccagataaagatttgcataggattcctaaaa 380
Query: 181 tgggctgaatatcatcacagaagagaaatatctgtgattataaagagagtccttgagatt 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 tgggctgaatatcatcacagaagagaaatatctgtgattataaagacagtccttgagatt 440
Query: 241 gggggacttgggatgggaaggcaaggttctcctaatattcagaggtgatagagatgaagt 300
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 441 gggggacttgggatgggaaggcaagcttctcctaatattcagaggtgatggagatgaagt 500
Query: 301 tgggacagatagctctcacttcttttt-----caccctcctcacaccctgccgcctgacc 355
|||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 tgggacagatagctctcacttc-----agcaccaccctcctcacaccctgccgcctgacc 555
Query: 356 caggtccccagtcttcaccataccctacccaagtgttaattgatatttgtaatttgatgc 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 caggtccccagtcttcaccataccctacccaagtgttaattgatatttgtaatttgatgc 615
Query: 416 tttgtggctacagctttaacaagtgtattttagcgacctcagaattagtgtctcagaatc 475
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 616 tttgtggctacagctttaacaagtgtattttagggacctcagaattagtgtctcagaatc 675
Query: 476 gattctgagaaaaccattactgacatataataagatttataatagaaaaagcaaaaata 534
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gattctgagaaaaccattactgacatataataagatttataatagaaaaagcaaaaata 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no146_a12.g1 MSMg01no146_a12.g1 CHROMAT_FILE:
MSMg01no146_a12.g1 PHD_FILE: MSMg01no146_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:19 2005
(624 letters)
>mm_chr3_84941132_84942155
Length = 1024
Score = 948 bits (490), Expect = 0.0
Identities = 515/528 (97%), Gaps = 9/528 (1%)
Strand = Plus / Minus
Query: 96 ggttaatatccatccttactgctggtgggaccaggctatgcttctctgtgaaagagaggg 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 ggttaatatccatccttactgctggtgggaccaggctatgcttctctgtgaaagagaggg 965
Query: 156 acttctgatgacccaagtcctaggatcctggagtcctagagtttgaatgagatttctgat 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 acttctgatgacccaagtcctaggatcctggagtcctagagtttgaatgagatttctgat 905
Query: 216 catcagtttgcttgggatcctttctgctaagcttgaatgaggccttgtggtccgactctg 275
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 904 catcagtttgcttgggatcctttctgctaagcttgaatgaggccttgtggttcgactctg 845
Query: 276 cccatctttttttttttttttttttttt--ccctgagactgatgtctcatggtgaactta 333
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 844 cccatc-------tttttttttttttttccccctgagactgatgtctcatggtgaactta 792
Query: 334 ttcctggagctgagctctgggtaccaatacatctaaaaaggaagtctgcctgcttggcca 393
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 791 ttcctggagctgagctctgggtaccaatacatctaagaaggaagtctgcctgcttggcca 732
Query: 394 tggagatccaccactgcacttcactcccccattgtaggcagtaacagtggtaaggctaga 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 tggagatccaccactgcacttcactcccccattgtaggcagtaacagtggtaaggctaga 672
Query: 454 gtttgtttatgccttggaaaccttacagatgttactttggagaaaacaaaaaagctgagt 513
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 671 gtttgtctatgccttggaaaccttacagatgttactttggagaaaacagaaaagctgagt 612
Query: 514 gtcttttctaaagtcagagaggagccactcacagccatgtttgtgctgctttgtcccctt 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gtcttttctaaagtcagagaggagccactcacagccatgtttgtgctgctttgtcccctt 552
Query: 574 tgcctattttattacagtccagtctagtgtcacctcttgacaccactt 621
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tgcctattttattacagtccagtctagtgtcacctcttgacaccactt 504
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
