Query= MSMg01no146_d18.b1 MSMg01no146_d18.b1 CHROMAT_FILE:
MSMg01no146_d18.b1 PHD_FILE: MSMg01no146_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:46 2005
(614 letters)
>mm_chr3_12858329_12859342
Length = 1014
Score = 835 bits (432), Expect = 0.0
Identities = 459/468 (98%), Gaps = 2/468 (0%)
Strand = Plus / Minus
Query: 1 gctagtgacacaccttctccaacaaagtcacacgtaatccaacaagaccacatcttcc-c 59
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
Sbjct: 775 gctagtgacacaccttctccaacaaagtcacacgtaatccaacaaggccacatc-tcctc 717
Query: 60 tagtgccatttgctatgggcaaatggtggcaatttttattcatactaccccgtatgtgat 119
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 tagtgccacttgctatgggcaaatggtggcaatttttattcatactaccccgtatgtgat 657
Query: 120 atatgtaaacttatgtattataaaactacttataatttacatattctaagtgttttatac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 atatgtaaacttatgtattataaaactacttataatttacatattctaagtgttttatac 597
Query: 180 atcagatataatgatatactgatactgaatctgttcccatatttgagctatcaggctata 239
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 596 atcagatataatgatatactgatactgaatctgttcccatatttgagttatcaggctata 537
Query: 240 ttgagcaaaattgacatgtgcataacattttagatacagttttatctcactaacttcatt 299
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 536 ttgagcaaaattgacatgtgcataacagtttagatacagttttatctcactaacttcatt 477
Query: 300 tttattttattagaaatacattaagtgatataaactaaaacatatattttattggttttt 359
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 476 tttattttattagaaatacattaagtgatataaactaaaacatacattttattggttttt 417
Query: 360 aatattttaagaaactttcatctttttgtatgacgactgtacagatttctattacctcaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 aatattttaagaaactttcatctttttgtatgacgactgtacagatttctattacctcaa 357
Query: 420 acagtatgaaagtgttaaatttatgtttatccttaccatttttctttt 467
|||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 356 acagcatgaaagtgttaaatttatgtttatccttactatttttctttt 309
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no146_d18.g1 MSMg01no146_d18.g1 CHROMAT_FILE:
MSMg01no146_d18.g1 PHD_FILE: MSMg01no146_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:46 2005
(484 letters)
>mm_chr3_12703453_12704337
Length = 885
Score = 754 bits (390), Expect = 0.0
Identities = 458/484 (94%), Gaps = 12/484 (2%)
Strand = Plus / Plus
Query: 1 gtagcctgtgtgaatgaagaaatggctgtcccttcaagtgccccaattcccaaaacaaac 60
|||| |||||||||||||||||||||||| | |||||||||||||||| |||| ||||
Sbjct: 200 gtagtctgtgtgaatgaagaaatggctgttcattcaagtgccccaatt---aaaa-aaac 255
Query: 61 aaccaaaccaaaccaaaccaaaccaaaccaaacc-aaac----caaaccaaaccaaaaca 115
|||||||||||| ||||||||||||||||||||| |||| |||| |||| |||||||
Sbjct: 256 aaccaaaccaaaacaaaccaaaccaaaccaaaccaaaacaaaacaaaacaaaacaaaaca 315
Query: 116 aaacaaaacaaaacaaaacaaaacaaaacaaaacaaatccttgtctccttacgtacctat 175
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 316 aaacaaaacaaaacaaaacaaaacaaaacaaaacaaagccttgtctccttaagtacctat 375
Query: 176 acacaaaattttggtagtagtgaagttttcttatcaatgcacttccattacagccctgga 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 acacaaaattttggtagtagtgaagttttcttatcaatgcacttccattacagccctgga 435
Query: 236 aactatcaaattaacccatcttcctgccatattagaaagtgtgctaaactctggactaca 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aactatcaaattaacccatcttcctgccatattagaaagtgtgctaaactctggactaca 495
Query: 296 ttccttgttaaatgtaaaaattgctgttcctcataattaaacaaagaaatacagtaaagt 355
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 496 ttccttggtaaatgtaaaaattgcttttcctcataattaaacaaagaaatacagtaaagt 555
Query: 356 tttcaatatgtgtttacattccagtactctccaccttattatacagcgcccatttttatt 415
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 556 tttcaatatgtgtttacattccagtactctccaccttattatacagctcccatttttatt 615
Query: 416 gcagttatctattgctcccagaatagcttttctgtttttttttt-tttggttgttgttgt 474
|||||||||||||||||||||||||||||||||| ||||| ||| |||| ||||| || |
Sbjct: 616 gcagttatctattgctcccagaatagcttttctggtttttgtttgtttgtttgtt-tt-t 673
Query: 475 tgtt 478
||||
Sbjct: 674 tgtt 677
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 885
Length adjustment: 10
Effective length of query: 474
Effective length of database: 875
Effective search space: 414750
Effective search space used: 414750
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
