Query= MSMg01no146_f18.b1 MSMg01no146_f18.b1 CHROMAT_FILE:
MSMg01no146_f18.b1 PHD_FILE: MSMg01no146_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:02 2005
(274 letters)
>mm_chr3_121554944_121555617
Length = 674
Score = 487 bits (252), Expect = e-142
Identities = 268/274 (97%), Gaps = 2/274 (0%)
Strand = Plus / Minus
Query: 1 gattaccccatgtgaatgtcatttatgtcactgaactttacatttaaacttggtagagtt 60
|||||| | |||||||||||||||||| |||||||||||||| ||||||||||||| ||
Sbjct: 560 gattacacaatgtgaatgtcatttatgccactgaactttaca--taaacttggtagattt 503
Query: 61 catgtgatatattttacctaatgaaaaatatttttaaagggctaatgcagtgaaactcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 catgtgatatattttacctaatgaaaaatatttttaaagggctaatgcagtgaaactcct 443
Query: 121 gggttatttgtcgcctctcctgtgctgttgcctaactctctgtcccttcacagctggatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gggttatttgtcgcctctcctgtgctgttgcctaactctctgtcccttcacagctggatt 383
Query: 181 cagtgtgatgtcaaaggcaagggccatatcataatgtggcttgtcctttgctgacctccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cagtgtgatgtcaaaggcaagggccatatcataatgtggcttgtcctttgctgacctccc 323
Query: 241 tgtgtgccttgcagttggctggactctgtaaatc 274
||||||||||||||||||||||||||||||||||
Sbjct: 322 tgtgtgccttgcagttggctggactctgtaaatc 289
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space: 176225
Effective search space used: 176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no146_f18.g1 MSMg01no146_f18.g1 CHROMAT_FILE:
MSMg01no146_f18.g1 PHD_FILE: MSMg01no146_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:02 2005
(518 letters)
>mm_chr3_121400830_121401747
Length = 918
Score = 899 bits (465), Expect = 0.0
Identities = 504/521 (96%), Gaps = 8/521 (1%)
Strand = Plus / Plus
Query: 2 cttccatctaagaaagcaatatggctgctgacagatgatgtcagggggctcacctggcta 61
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 202 cttccatctaagaaagcaatatggctgctgacaggtgatgtcagggggctcacctggcta 261
Query: 62 ggtgtgcaagtgacgcattcatcacacctggaacagaattttttaaattaggttaaacca 121
|||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 262 ggtgtgcaagtgacacattcatcacacctgaaacagaatttttaaaattaggttaaacca 321
Query: 122 gaaacaagctaacagaaaagtaagctgggtttggaaggagcgtcagcattcgggggtcct 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 322 gaaacaagctaacagaaaagtaagctgggtttggaaggagcgtcagcattcggggatcct 381
Query: 182 catattctggggtcattaccattggcactgctgttggcacaaggcctgggcttctcagta 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 catattctggggtcattaccattggcactgctgttggcacaaggcctgggcttctcagta 441
Query: 242 cttcagtggttcctgaggaccaaccactttt----cttgaatttggtcacgcaggaacag 297
||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 442 cttcagtggttcctgaggaccaaccac----aaagcttgaatttggtcatgcaggaacag 497
Query: 298 atttttcagggaggatgagggagtccatgctactcttggctgagtaacagaagttgctgg 357
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 498 atttttcagggaggatgagggagtccatgctactcttggccgagtaacggaagttgctgg 557
Query: 358 agagggataataggaagacatattctcctggaaatacagctatgcaccattctggtaata 417
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 558 agagggataataggaagacatattctcctggaaatgcagctatgcaccattctggtaata 617
Query: 418 gcctagcttagagataagatggtgattggcttatggtatgtcaagctcaggttgcttaac 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gcctagcttagagataagatggtgattggcttatggtatgtcaagctcaggttgcttaac 677
Query: 478 aactaagatacttttttcctgatagagcccacattctaaaa 518
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aactaagatacttttttcctgatagagcccacattctaaaa 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
