Query= MSMg01no146_f21.b1 MSMg01no146_f21.b1 CHROMAT_FILE:
MSMg01no146_f21.b1 PHD_FILE: MSMg01no146_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:03 2005
(744 letters)
>mm_chr3_146978546_146979689
Length = 1144
Score = 994 bits (514), Expect = 0.0
Identities = 665/746 (89%), Gaps = 49/746 (6%)
Strand = Plus / Minus
Query: 1 ttccatataatctcttgccaggatgaacccttaagctaaaatacttcccgtattctcaga 60
||||||| ||||||||||||||||||| | |||||||||||||| |||||||| ||
Sbjct: 828 ttccatacaatctcttgccaggatgaaaacagaagctaaaatacttaatgtattctcgga 769
Query: 61 ggctagtgttactccaatatcaaaaataaacaaatgtattagttataatccaaatattat 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 768 ggctagtgttactccaatatcaaaaataaacaaatatattagttataatccaaatattat 709
Query: 121 ataaagataggtgtgaaaacataaagaattaaatcaaacaatatatgaaataatgtaggt 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 ataaagataggtgtgaaaccataaagaattaaatcaaacaatatatgaaataatgtaggt 649
Query: 181 atcactgccatataggatttatatcatacacacacacacacacacacacacacacacaca 240
|||||||||||||||||||||||||||
Sbjct: 648 atcactgccatataggatttatatcat--------------------------------- 622
Query: 241 cacacacacacacacacacacaca--tagcatttgggaatcagttttgtaacccgtaagg 298
|| | | | | |||||||||||||||||||||||||||| |||||
Sbjct: 621 -------------gcatatatatatttagcatttgggaatcagttttgtaacccataagg 575
Query: 299 ttaactagctatgaaggaaatgtctcatggtcatgtccataagtgcagaaaggatttgca 358
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 574 ttaactagctatgaaggaaatgtgtcatggtcatgtccataagtgcagaaaggatttgca 515
Query: 359 gatccctaagtctctcatggttgtattaatcaactggggtagagaagaccaccctttttg 418
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 514 gatccctaagtctctcatggttgtattaatcaactggaatagagaagacctccctttttg 455
Query: 419 ttttctattttaaaatttattcttctctcatacattacatcctgaccacagtttccccca 478
| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 454 tgttctattttaaaatttattcttctctcatacattacatcctaacaacagtttccccca 395
Query: 479 tcttcactctcccccagatccactctccctccatttcccttcagaaaagagtaagccaag 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ccttcactctcccccagatccactctccctccatttcccttcagaaaagagtaagccaag 335
Query: 539 aaggtttttcttaatgtagaaaagaatacacacagaaaactcgacgtaaaataaaaccta 598
|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 334 gaggtttttcttaatgtagtaaagaatacacacagaaaactcgatgtaaaataaaaccta 275
Query: 599 tgatgacaaatatgaagccctcacagcaagagaataaagcaaagatgcattttctgactt 658
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 274 tgatgacaaatatgaagccctcacagcaagggaataaagcaaagatgcattttctgactt 215
Query: 659 gtcctttttgttatcatattagaagtcttagctaatacaataagatatgaaaaggaaaaa 718
| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 214 gcccttttcgttatcatattagaagtcttagctgatacaataagatatgaaaagg-aaaa 156
Query: 719 aaagttatacagacttagagagaaga 744
||||||||||||||||||||||||||
Sbjct: 155 aaagttatacagacttagagagaaga 130
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 744
Length of database: 1144
Length adjustment: 10
Effective length of query: 734
Effective length of database: 1134
Effective search space: 832356
Effective search space used: 832356
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no146_f21.g1 MSMg01no146_f21.g1 CHROMAT_FILE:
MSMg01no146_f21.g1 PHD_FILE: MSMg01no146_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:03 2005
(788 letters)
>mm_chr3_146873771_146874957
Length = 1187
Score = 1417 bits (733), Expect = 0.0
Identities = 775/791 (97%), Gaps = 7/791 (0%)
Strand = Plus / Plus
Query: 1 ctgagtgagtcagcaaagactggtgtcccatctagaaggaaaagcgccaggagacaaacc 60
||||||||||||||||||||||||||| | ||||||||||||| | ||||||||||||
Sbjct: 201 ctgagtgagtcagcaaagactggtgtctgagctagaaggaaaagtgggaggagacaaacc 260
Query: 61 aagcagagaacataggatcttctggcatgggccaagcatgttcaaggaagactagtacaa 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 aagcagagaacataggatcttctggcatgggctaagcatgttcaaggaagactagtacaa 320
Query: 121 aattagtggagaatagaaactg-ttgtgagaataggccacagagaccagtatgagactct 179
||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattagtggagaatagaga-tggttgtgagaataggccacagagaccagtatgagactct 379
Query: 180 gccccagatccaatgacttctgactgagatgcaagcactgctttctgtaatcttcagtac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gccccagatccaatgacttctgactgagatgcaagcactgctttctgtaatcttcagtac 439
Query: 240 attttaatgccatattctccttccatcacatctgttttatacagcctagtgttactgggt 299
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 attttaatgccatattccccttccatcacatctgttttatacagcctagtgttactgggt 499
Query: 300 ctcttactcttgggacatgttt--atgagtttcacatgcgtttgaacttctcagggcagc 357
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctcttactcttgggacatg---ggatgagtttcacatgcgtttgaacttctcagggcagc 556
Query: 358 tgagaggtctgccgaccatgagaaatagttttgtgatgtgtacgaactagacctggctct 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tgagaggtctgccgaccatgagaaatagttttgtgatgtgtacgaactagacctggctct 616
Query: 418 tatacctgattttgtttctgttttcaacatgcagttaagctgtagaccccacccagcgtg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tatacctgattttgtttctgttttcaacatgcagttaagctgtagaccccacccagcgtg 676
Query: 478 ggggcctccagttacactggctgctgagagtgtctgctatgtatgcacatggttgaaaat 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ggggcctccagttacactggctgctgagagtgtctgctatgtatgcacatggttgaaaat 736
Query: 538 tccttctgaataaagtcattgttccctaggcacaaaaggagagtaactaaaaactcagag 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tccttctgaataaagtcattgttccctaggcacaaaaggagagtaactaaaaactcagag 796
Query: 598 atcagagaatgttctgggttacacagaaaagagagactgaaagagcaattgtttgctctc 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 atcagagaatgttctgggttacacagaaaagagagactgaaagagcaattgtttgctctc 856
Query: 658 tgcttttccagatagttctttttatctgcttcttggctttcccttagaattcattaactt 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 tgcttttccagatagttctttttatctgcttcttggctttcccttagaattcattaactt 916
Query: 718 catttctgcctatcttcatggtgctgctgtagtaggtttgatatatttttgcagaccaga 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 catttctgcctatcttcatggtgctgctgtagtaggtttgatatatttttgcagaccaga 976
Query: 778 tgaacatacac 788
|||||||||||
Sbjct: 977 tgaacatacac 987
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 788
Length of database: 1187
Length adjustment: 10
Effective length of query: 778
Effective length of database: 1177
Effective search space: 915706
Effective search space used: 915706
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
