Query= MSMg01no146_j12.b1 MSMg01no146_j12.b1 CHROMAT_FILE:
MSMg01no146_j12.b1 PHD_FILE: MSMg01no146_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:32 2005
(638 letters)
>mm_chr3_55701224_55702262
Length = 1039
Score = 1158 bits (599), Expect = 0.0
Identities = 629/643 (97%), Gaps = 9/643 (1%)
Strand = Plus / Minus
Query: 1 ataaagacatttctgtatcctatttaacctatttatgttgctattcacgtcatatcacat 60
||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||
Sbjct: 839 ataaagacatttctgtatcctatttaaactatttatgttgctatttatgtcatatcacat 780
Query: 61 gattttggtatgtttcttctctttgattactgatatttcacttaatgacatgcataggca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 gattttggtatgtttcttctctttgattactgatatttcacttaatgacatgcataggca 720
Query: 121 aatgtataccttttgatgaatattttacccagttgtttttttacagtactgaacttgaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 aatgtataccttttgatgaatattttacccagttgtttttttacagtactgaacttgaaa 660
Query: 181 cagacatatttctcagtatttgcgttgatgtgagggttttagcttctgaagtttctccgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 cagacatatttctcagtatttgcgttgatgtgagggttttagcttctgaagtttctccgg 600
Query: 241 gagaagaggaacacgtttgcactagcatagagctaacagtcacttgtaatcagatttaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 gagaagaggaacacgtttgcactagcatagagctaacagtcacttgtaatcagatttaac 540
Query: 301 ccagaggact----attttggccagatgtttgtgacagtgaatatgtctcttctttccct 356
|||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ccagaggactagaaa----ggccagatgtttgtgacagtgaatatgtctcttctttccct 484
Query: 357 ttttcattcccttcattgcagtctaactaaatcaaaaggtcaagaaaagggcaagacatt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 483 ttttcattcccttcattgcagtctaactaaatcaaaaggtcaagaaaagggcaagacgtt 424
Query: 417 ccagtcattcatcattggtataaaaaaagtttaatgaccctaagaaatatcaaaaatac- 475
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 423 ccagtcattcatcattggtataaaaaaagtttaatgaccctaagaaacatcaaaaatact 364
Query: 476 ttttttgcatttataaaaatagtaaattagctataattctgtttttagtgctgtgtagat 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ttttttgcatttataaaaatagtaaattagctataattctgtttttagtgctgtgtagat 304
Query: 536 tatttcagaaacataaaagtgaatgccttttctctgtaattgagctgatagctttttcaa 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tatttcagaaacataaaagtgaatgccttttctctgtaattgagctgatagctttttcaa 244
Query: 596 gccagagtgtgttggcttccttgtattacaagcgcttcctcag 638
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gccagagtgtgttggcttccttgtattacaagcgcttcctcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1039
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1029
Effective search space: 646212
Effective search space used: 646212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no146_j12.g1 MSMg01no146_j12.g1 CHROMAT_FILE:
MSMg01no146_j12.g1 PHD_FILE: MSMg01no146_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:33 2005
(719 letters)
>mm_chr3_55585387_55586509
Length = 1123
Score = 1255 bits (649), Expect = 0.0
Identities = 703/727 (96%), Gaps = 12/727 (1%)
Strand = Plus / Plus
Query: 1 tccttctctacaagacagctcactatgaga---ccgttactcaagctttctctacatctc 57
|||||||||||||||||||||||||||||| | |||||||||||||||| |||||
Sbjct: 201 tccttctctacaagacagctcactatgagatggc----actcaagctttctctaaatctc 256
Query: 58 agagaacaccttcaggaagtgttcccactacagcatacagccctatctgctgtctggtat 117
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 257 agaaaacaccttcaggaagtgtttccactacagcatacagccctatctgctgtctggtat 316
Query: 118 ttcagcactggccaatctagctacagacaagggaaactgcaaacaggtgaacttgtttta 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttcagcactggccaatctagctacagacaagggaaactgcaaacaggtgaacttgtttta 376
Query: 178 attaaaaggctccatttttcgttgggtagatatcatcgactccattgagcaatacttctt 237
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 377 attaaaaggctccatttttagttgggtagatatcatcgactccgttgagcaatacttctt 436
Query: 238 aaattcctctcagcaaatgcaaatggggaaaacctaggttaaaaacagaagagactctgc 297
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 437 aaattcctctcagcaaatgcaaatggggaaaacctaggttaaaaagagaagagactctgc 496
Query: 298 ctaaggtttggaaatgttctgactgcggacac-----cgagtgaaggctaaagaactccc 352
|||||||||||||| ||||||||||| |||| ||||||||| |||||||||||||
Sbjct: 497 ctaaggtttggaaacattctgactgcgaacacgaacacgagtgaagactaaagaactccc 556
Query: 353 ccagctgaagccagcagtcagtcagtaagcaaagttctaacttacactaaaaagacccca 412
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 557 ccagctgaagccagcagtcagtcagtaagcaaagttctaacttgcactaaaaagacccca 616
Query: 413 gggactaacgggcattaattaccttactctaaatgcaagttagtgactttgttctagaag 472
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gggattaacgggcattaattaccttactctaaatgcaagttagtgactttgttctagaag 676
Query: 473 cccctttgacttcgctaattggtggatgaccattagtacaactggatagctcatcagagg 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 cccctttgacttcgctaattggtggatgaccattagtacaactggatagctcatcagagg 736
Query: 533 tgaacagacaagtgggcttttcagcaaagagaaccacttgtcttcaccaagtcttttcca 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tgaacagacaagtgggcttttcagcaaagagaaccacttgtcttcaccaagtcttttcca 796
Query: 593 aatgtcaatatgcttcaagttataccaaagctgggagatttcatcttgcttttcaacctg 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 aatgtcaatatgcttcaagttataccaaagctgggagatttcatcttgcttttcaacctg 856
Query: 653 tctaggtggcctgggtgggtttctgccggcagcagtttcctacctttggtttctatgctt 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 tctaggtggcctgggtgggtttctgccggcagcagtttcctacctttggtttctatgctt 916
Query: 713 ctatcca 719
|||||||
Sbjct: 917 ctatcca 923
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 719
Length of database: 1123
Length adjustment: 10
Effective length of query: 709
Effective length of database: 1113
Effective search space: 789117
Effective search space used: 789117
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
