BAC Information

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BAC

Clone NameMSMg01-146O12
Chromosome3 (Build37)
Map Location 7,938,466 - 7,939,131
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667801, Pkia, LOC667807, 3110050N22Rik, Il7, LOC620822
Downstream geneLOC633072, LOC545500, LOC620966, Stmn2, Hey1, LOC100039504, Mrps28, Tpd52
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146O12.T7 (MSMg01no146_o12.b1)MSMg01-146O12.TJ (MSMg01no146_o12.g1)
ACCAG350319AG350320
length1,2371,225
length of high quality
(start - end)
818 (41 - 858)641 (139 - 779)
definitionCHROMAT_FILE: MSMg01no146_o12.b1 PHD_FILE: MSMg01no146_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:15 2005CHROMAT_FILE: MSMg01no146_o12.g1 PHD_FILE: MSMg01no146_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCGTACCATANNNNNTACAATGGGCGCTATAGACTCCTATAGGGAGAGG
ATCCGCGGAATTCAAGACCCATACCTAACCCTTATAAAAGCAATCTACAG
CAAACCAGTAGCCAACATCACCGTAAATGGTGAGACCCTGGAAACAATCT
CACTAAAATCAGGGACTAGACAAGGCTGTTCACTCTCTCCCTACCTATTC
AACATTGTACTAGAAGTCCTAGCCAGAGCAATTAGACAACAAAAAAAGAT
CAAGGGGATACAAATTGGAAAGGAAGAAGTCAAAATATCACTCTTTGCAG
ATGATATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTC
CTAAACCTGCTAAACAGCTTCAATGAAGTAGCTGGATATAAAATTAACTC
AAGCAAGTCAATGACCTTTCTGTACACACAGGATAAACAGGCTGAGAAAC
AAATTAGGGAAACAACACCATTTGCAATAATCACAAATAATATAAAATAC
CTTGGCATGACTCTAACTAAGGAAGTGAAAGTTCTGTATGATAAGAACTT
CAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATC
TCCCATGCTCATGGATTGGCAGGATCAATATTGCAAAAATGGCTATCCTG
CTAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCA
ATTCTTCAACGAATTAGAANAGGCAATCGGCAGATTCATCTGGAATAACA
GAAAACCTCGGATAGCAAAAACTCTTCTCAAGGATAAAAGAACCTCTGGT
GGAATCAACATGCCTGACCTAAAGTTTTACTACAGAGTAATTGTGATAAA
AACTACATGGAACTGGTATAGTGACAGACAAGTAGACCAATGGAACAGAT
TTGAAGACCCAGAGATGAACCCACACTCCTTTGGTCACTTGATCTTTTGA
CAGGAAGTTAAACCCTTCAGTGTAAAAAAGTCAGATTTTTCACCCAATAA
TGGTGCCCCAATTGGGTGTTACCCTGTTAAAAAAAGGGGAAATGACCCCT
TCCATATTCCTTGGATAAAGGCCAAAACTCATTGGGATTAAGGAGTTTTT
CTTTAAAACCCAAGAAATTGGAATTCTTTTTTAGGAAAAAACTAGGCACT
ACCCTCCTAAAACTGTTCCTCCGCGTTAAAATATTTTGACCTACAATACC
ATTTTTGTGTGTTTTTATATTTATATATTTTCAATTT
NCCCATTCTTNNNNNNAAGCAGTGAGGCTGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAGGCTTAACAAAAGACA
AATAAAAGGTCATTTGAACCTATTCTACAAAGCCCCCTAGAGAGGAATGT
ATCACAANCTTTTTTTTTGATTAGTTAAAATATATTCTTACTATTTTTAG
GACGTCCCTGGATAAAAAAAAAACAAAACAAAACACACACACAAAAAAAA
ACCAGACTGACATTTACTTTCTAAAGTAACCAGTTTATCATTATAAAATA
ACAACTTAGCTTGAAGAATTATTAAGATAGAAGTTGTTATATTTCTTTCT
CTTATCTAATTGCTAAATATAGAAAAACTAGGTTTGAGATTCATTTCTGG
AGGTATTTGATTGACTATGAAATTTTATTACTTGACATTCCTTTTTTTCT
TTCCGTAGTGACAAAAATTTTGGAGTCCTAGAACCAGCTGAAGAGGTTTT
TCTTATGACTGTAATAATTTTAGCTTTATGTATGAATTAATATTTTAGAA
GACATAGATTTTAACACATTGTAGATCTACTTAGGTTGTATGTGATAGCT
CTTCTGAAATTAAAACTTTCTTAGTTTTCTGTCTGAGCATCTGTCCATTT
CTTTCTTTCTATGAATTGACAACTCTGAAATTTTGAATCTTAAGACATAG
TTTTGGCAAAGGAGGAGGAGAGGAGAGGGAAGAATAGAAGGAGAAGGAGG
AAGTTTAATAATGGGATTTCAAATATGTCGTTCTATGATTCTAGCTACAA
GTTTTCCCCATCCAATGCCCTTGAGGGGGACTGATCCAATCCTCACAGGG
ATAGAAATAACACTTCTCTGCAGAAGTGGTAGACCTTTTCCAGAAATTTT
GAGCAGCTTAATAGAAAGGGATCTATACTATAGTTCATAGAGAGCATATA
TTTAACTCCAAGCACAAGGGAATTGCTTTTATTTTCCCCACAGCAAGGCC
CCCCTTTTTTGGAACAAAAAGTTTTGGAAAAAAAAAAAAATCCTTGGCTA
ATTGTTCCCTGAGGGAACCCCCCTTTAAATTCCTCTTTTAATTCCCCCGT
GGGTTATAAAGGAAAGAAACACCCTTCCCTCCCACAAAAAAATCCCGCGA
ATGGCCGCCACTTGTAAATATCTCCCTCCTCACAAAATAAAAATTTGTTA
TCTCTCTGATTATCAAAAGAAAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_o12.g1 MSMg01no146_o12.g1 CHROMAT_FILE:
MSMg01no146_o12.g1 PHD_FILE: MSMg01no146_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:15 2005
         (641 letters)



>mm_chr3_7938243_7939283
          Length = 1041

 Score = 1110 bits (574), Expect = 0.0
 Identities = 633/668 (94%), Gaps = 29/668 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagaggaatgtatcacaanc-tttttttttgattagttaaaatatattcttactatttt 59
           ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 889 agagaggaatgtatcacaa-cttttttttttgattagttaaaatatattcttactatttt 831

                                                                       
Query: 60  taggacgtccctggataaaaaa--aaaacaaaaca-----------------------aa 94
           ||||||||||||| ||||||||  |||||||||||                       | 
Sbjct: 830 taggacgtccctgaataaaaaaacaaaacaaaacacacacacacacacacacacacacac 771

                                                                       
Query: 95  acacacacacaaaaaaaaaccagactgacatttactttctaaagtaaccagtttatcatt 154
           ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 acacacacacacaaaaaaa-cagactgacatttactttctaaagtaaccagtttatcatt 712

                                                                       
Query: 155 ataaaataacaacttagcttgaagaattattaagatagaagttgttatatttctttctct 214
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 711 ataaaataacaacttagcttgaagaattactaagatagaagttgttatatttctttctct 652

                                                                       
Query: 215 tatctaattgctaaatatag-aaaaactaggtttgagattcatttctggaggtatttgat 273
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct: 651 tatctaattgctaaatatagaaaaaactaggtttgagattcatttctggaggtatttgac 592

                                                                       
Query: 274 tgactatgaaattttattacttgacattcctttttttctttccgtagtgacaaaaatttt 333
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tgactatgaaattttattacttgacattcctttttttctttccgtagtgacaaaaatttt 532

                                                                       
Query: 334 ggagtcctagaaccagctgaagaggtttttcttatgactgtaataattttagctttatgt 393
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ggagtcctagaaccagctgaagaggtttttcttatgactgtaataattttagctttatgt 472

                                                                       
Query: 394 atgaattaatattttagaagacatagattttaacacattgtagatctacttaggttgtat 453
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 atgaattaatattttagaagacatagattttaacacattgtagatctacttaggttgtat 412

                                                                       
Query: 454 gtgatagctcttctgaaattaaaactttcttagttttctgtctgagcatctgtccatttc 513
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gtgatagctcttctgaaattaaaactttcttagttttctgtctgagcatctgtccatttc 352

                                                                       
Query: 514 tttctttctatgaattgacaactctgaaattttgaatcttaagacatagttttggcaaag 573
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tttctttctatgaattgacaactctgaaattttgaatcttaagacatagttttggcaaag 292

                                                                       
Query: 574 gaggaggagaggagagggaagaatagaaggagaaggaggaagtttaataatgggatttca 633
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 291 gaggaggagaggagagggaagaataggaggagaaggaggaagtttaataatgggatttca 232

                   
Query: 634 aatatgtc 641
           ||||||||
Sbjct: 231 aatatgtc 224


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)