Query= MSMg01no147_j12.b1 MSMg01no147_j12.b1 CHROMAT_FILE:
MSMg01no147_j12.b1 PHD_FILE: MSMg01no147_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:13 2005
(676 letters)
>mm_chr3_60164203_60165278
Length = 1076
Score = 1135 bits (587), Expect = 0.0
Identities = 657/693 (94%), Gaps = 20/693 (2%)
Strand = Plus / Plus
Query: 4 ggaattcaccactaggcatgtccatgaggtcatttccaaaaaagaataatagatgttatt 63
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 204 ggaattcaccactaggcatgtccatgaggtcatttccagaaaagaataatagatgttact 263
Query: 64 gtaaacatgaatcgcaccatggtatggactgaaggctcatcccaaataaaaaggagaaag 123
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 264 gtaaacatgaatcacaccatggtatggactgaaagctcatcccaaataaaaaggagaaag 323
Query: 124 cagaaaatgggatgagcggggtatacctagatgtgagcaagtgctttcagcatcctgata 183
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 324 cagaaaatgggatgagcgggatatacctggatgtgagcaagtgctttcagcatcctgata 383
Query: 184 ccatgacttcattactattatgacctagactctcaaactataagacaaaataaatcttac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 384 ccatgacttcattactattatgacctagactctcaaactataagacaaaataaatgttac 443
Query: 244 ccaattgatctcttttagatattttgttagggcaacgagaaaaaaaaagccaatactagc 303
||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 444 ccaattgatctcttttaaatattttgttagggcaatgagaaaaaaaaacccaatactagc 503
Query: 304 aatcattgttttctacttatccttcatgggaagaatgggttaaaatattttctcttttag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aatcattgttttctacttatccttcatgggaagaatgggttaaaatattttctcttttag 563
Query: 364 aatactagatggaagtgttctgtgttctgaattgagacagaaaatccatccaaacaaaga 423
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaaactagatggaagtgttctgtgttctgaattgagacagaaaatccatccaaacaaaga 623
Query: 424 agatgcagtaggttcacacgaagtccactaacaattcctgtttatgaaacttctacgttc 483
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agatgcagtaggttcacataaagtccactaacaattcctgtttatgaaacttctacgttc 683
Query: 484 tcccttgttgtaatacttattagtaaatacgtcctggcttggtttaattttctgaataga 543
||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 684 tcccttgttgtaataattattagtaaataagtcctggcgtggtttaattttctgaataga 743
Query: 544 agacacacacacacacacacacacacacacacac--------------------tttata 583
|||||||||||||||||||||||||||||||||| ||||||
Sbjct: 744 agacacacacacacacacacacacacacacacacacacacacacacacacacactttata 803
Query: 584 ttttaatatgtcttaaacagcacaatagaaacagcacaatagctgtgccactgcccaacc 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ttttaatatgtcttaaacagcacaatagaaacagcacaatagctgtgccactgcccaacc 863
Query: 644 tacactgctgatagaatctacctcctgctgata 676
|||||||||||||||||||||||||||||||||
Sbjct: 864 tacactgctgatagaatctacctcctgctgata 896
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no147_j12.g1 MSMg01no147_j12.g1 CHROMAT_FILE:
MSMg01no147_j12.g1 PHD_FILE: MSMg01no147_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:13 2005
(590 letters)
>mm_chr3_60222795_60223785
Length = 991
Score = 1019 bits (527), Expect = 0.0
Identities = 575/591 (97%), Gaps = 1/591 (0%)
Strand = Plus / Minus
Query: 1 tgtaggattggtagagccacgaagtcagccaaagggaaaggcatacacaactttgggagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 tgtaggattggtagagccacgaagtcagccaaagggaaaggcatacacaactttgggagg 732
Query: 61 agagaagagggatatttagaagaagcaagttttctagcttgtggttaggaatatattggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 agagaagagggatatttagaagaagcaagttttctagcttgtggttaggaatatattggg 672
Query: 121 attaattacagtgcaagctgtgttgtttttcttcctttgaactctcctgagccaaacaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 attaattacagtgcaagctgtgttgtttttcttcctttgaactctcctgagccaaacaag 612
Query: 181 aaagggcaggcatgggctggggtggggtgaagcacttagctttagaatcctcactgcata 240
|||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |||||
Sbjct: 611 aaagggcaggcatgggctggggtggggtaaagcactgagcttcagaatcctcaccgcata 552
Query: 241 ggtttcctcccaaaagagtcaaagagctttctttccctcattcatacgtgtaagccccac 300
|||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 551 ggtttcctcccagaagactcaaagagctttctctccctcattcatacgtgtaagccccac 492
Query: 301 tcatcgcaagccattggtatacagcttctcacctgtgaccacaaaggctgaacagcacat 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 491 tcatcgcaagccattggtatacagcttctcacctgtgaccacaaaggctgcacagcaaat 432
Query: 361 ctcttttagacatcactattttttttaattatggagaatgatttaggtcatataagtgaa 420
||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 431 ctcttttagacatgactatgttttttaattatggagaatgatttagttcatataagtgaa 372
Query: 421 ctaaagcaatctc-aaaaaagacaaaaaatccatgttttctgtcattagtggacattttt 479
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ctaaagcaatctcaaaaaaagacaaaaaatccatgttttctgtcattagtggacattttt 312
Query: 480 ctgtgtagccataaaatcttgcatgtatatattgaacggaaatggagccagcctggagaa 539
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 311 ctgtgtagccataaaatcttgcaggtatatattgaatggaaatggagccagcctggagaa 252
Query: 540 atagagggctgaaaggagggggtggggagagaaaatggaattggtttatta 590
||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 251 atagagggctgaaagaagggggtggggagagaaaatggaattggtttatta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 991
Length adjustment: 10
Effective length of query: 580
Effective length of database: 981
Effective search space: 568980
Effective search space used: 568980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
