BAC Information

Click to search

BAC

Clone NameMSMg01-148G12
Chromosome3 (Build37)
Map Location 36,403,431 - 36,568,844
singlet/doubletdoublet
Overlap geneLOC665709, Exosc9, Ccna2, Bbs7, Trpc3
Upstream geneLOC665655, Ube2l3-ps1, LOC625963, Atp11b, LOC665667, Dcun1d1, Mccc1, BC050811, Acad9, D3Ertd254e, Gpr103, Anxa5, 1810062G17Rik
Downstream gene4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148G12.T7 (MSMg01no148_g12.b1)MSMg01-148G12.TJ (MSMg01no148_g12.g1)
ACCAG351410AG351411
length728719
length of high quality
(start - end)		331 (38 - 368)505 (73 - 577)
definitionCHROMAT_FILE: MSMg01no148_g12.b1 PHD_FILE: MSMg01no148_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:17 2005CHROMAT_FILE: MSMg01no148_g12.g1 PHD_FILE: MSMg01no148_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,403,431 - 36,403,757)(36,568,340 - 36,568,844)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAC
CTTTGTTCCCTGAGATGATGCCAAAGGAGTCTTTACCCTTGAATTAATGT
GTCTTTCAGAGACTTGGGGCACAGAGTAGCCACCAAGCTACCCTTATTAT
GTTGCCTGTGGCATCTGGAACTCAGGAAGAATAGAGCCATAAAGCAGGGT
TAGGATTTTACAAAGTGAGCCTGAGAACTCTTTTCACAGCTTGTTGTGGT
TCTATAAAGTGTCTGTTAAAAATACCTACATTTAGCCGGGCGGGGTGGCG
CACGCCTTCAATCCCAGCACTCGGGAGGCAGAGGCAGGAGGATTTCTGAG
TTCGAGGCCAGCCTGGTCTACAAAGTGAGTTGCCGCACAGTCGGGGTCTA
TTTATGTGCCCCTCGCCCCCGATTATTCCACCCTGACTATTCCATATAAC
GTCACAGATTTACTATGCCGACCCTACCATTGTTAATTGTCCCCCAATTT
TACCTCACACTCAGTTTCCACGCATCCCGAGTATCGCCCACCATTTTCGC
CTGTATTTTGTACCTTATATCTTATTCTTCACCACTCCACCCATGACTCT
GCTCCTTTTTTTCTTCTGTCTTTCCCCTCTCCCCCCTTTATCTCCCCTAC
CTCTATTTTCGTCTTCTTCCCCTCCCTCCGCTTCCCTTTTTCTTCTCCCT
TTCCCCTTCCCCTTTTTCCTTGTCTCCN

CCCCATGCAGTGGTAGCCTGGCGGCGCCTGGTTCAGAXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCGTGAACATATACTTAGAGTGGTGAGCT
GTAACTGTTGGGTCAACCCACAAACACATGGGACCACAACGTTGTCTGTG
CATCAGGGAGATTCTCTGCTTTAATGGCTCTTTTAATGTCATTTGTTTCT
GTCAATCAGTATTACCTGACGAAAATTCCCTATTAGTGATGGACCATGTT
AAAATTTTATTCCGTTGCCAACCCTCCTGTGCATTTTAAATGGCTAAGGA
AAAGGAGACACTTGACTGCTAAGGGGAAGCTCCAGGCGCTCTCTTCAGCA
CATTTCCACTTTCCTGTTTTCTACATGAGGAGGTGGTAGCAAGCACTAGC
CCCTTGACATCACACCCCATGAGCAATAACTCTTTCGGCATAGAGGAATC
CCTCAGAAAGAGTATTCATTCTCTTAATATAGTTTTTCATAGTTAAGTTG
TTGGGGTTTTTTTTCCCCCAAGTACAATTGGCAACATGATCCAAGCTAAG
GAGAATCCATTTTCTCTAGGGTTTCAAGAGAATGCTACAAGTTTGCCTGC
CCACTTTCCATCCACAACAAATTCCCTCAGCGTTTGCAAACTCTCCGTGT
GCCCTTGTGTAGTTCTGTCCTTAGGTTAATACCCTTGCTAATCACTTCAT
GATTTTTTTTTCTGACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_g12.b1 MSMg01no148_g12.b1 CHROMAT_FILE:
MSMg01no148_g12.b1 PHD_FILE: MSMg01no148_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:17 2005
         (331 letters)



>mm_chr3_36403227_36403957
          Length = 731

 Score =  578 bits (299), Expect = e-169
 Identities = 320/327 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacctttgttccctgagatgatgccaaaggagtctttacccttgaattaatgtg 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacctttgtttcctgagatgatgccaaaggagtctttacccttgaattaatgtg 264

                                                                       
Query: 65  tctttcagagacttggggcacagagtagccaccaagctacccttattatgttgcctgtgg 124
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 265 tctttcagagacttggggcacagagcagccaccaagctacccttattatgttgcctgtgg 324

                                                                       
Query: 125 catctggaactcaggaagaatagagccataaagcagggttaggattttacaaagtgagcc 184
           |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 325 catctggaactcaggaagaatagagctataaagcaggtttaggattttacaaagtgagcc 384

                                                                       
Query: 185 tgagaactcttttcacagcttgttgtggttctataaagtgtctgttaaaaatacctacat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgagaactcttttcacagcttgttgtggttctataaagtgtctgttaaaaatacctacat 444

                                                                       
Query: 245 ttagccgggcggggtggcgcacgccttcaatcccagcactcgggaggcagaggcaggagg 304
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 445 ttagccgggcggggtggcacacgccttcaatcccagcactcgggaggcagaggcaggtgg 504

                                      
Query: 305 atttctgagttcgaggccagcctggtc 331
           || ||||||||||||||||||||||||
Sbjct: 505 atctctgagttcgaggccagcctggtc 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no148_g12.g1 MSMg01no148_g12.g1 CHROMAT_FILE:
MSMg01no148_g12.g1 PHD_FILE: MSMg01no148_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:18 2005
         (505 letters)



>mm_chr3_36568140_36569044
          Length = 905

 Score =  946 bits (489), Expect = 0.0
 Identities = 501/505 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgtgaacatatacttagagtggtgagctgtaactgttgggtcaacccacaaacacatggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 cgtgaacatatacttagagtggtgagctgtaactgttgggtcaacccacaaacacatggg 646

                                                                       
Query: 61  accacaacgttgtctgtgcatcagggagattctctgctttaatggctcttttaatgtcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 accacaacgttgtctgtgcatcagggagattctctgctttaatggctcttttaatgtcat 586

                                                                       
Query: 121 ttgtttctgtcaatcagtattacctgacgaaaattccctattagtgatggaccatgttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ttgtttctgtcaatcagtattacctgacgaaaattccctattagtgatggaccatgttaa 526

                                                                       
Query: 181 aattttattccgttgccaaccctcctgtgcattttaaatggctaaggaaaaggagacact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 aattttattccgttgccaaccctcctgtgcattttaaatggctaaggaaaaggagacact 466

                                                                       
Query: 241 tgactgctaaggggaagctccaggcgctctcttcagcacatttccactttcctgttttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tgactgctaaggggaagctccaggcgctctcttcagcacatttccactttcctgttttct 406

                                                                       
Query: 301 acatgaggaggtggtagcaagcactagccccttgacatcacaccccatgagcaataactc 360
           |||||||||||||||||||||||||||||||||||||||| ||   ||||||||||||||
Sbjct: 405 acatgaggaggtggtagcaagcactagccccttgacatcagacaggatgagcaataactc 346

                                                                       
Query: 361 tttcggcatagaggaatccctcagaaagagtattcattctcttaatatagtttttcatag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tttcggcatagaggaatccctcagaaagagtattcattctcttaatatagtttttcatag 286

                                                                       
Query: 421 ttaagttgttggggttttttttcccccaagtacaattggcaacatgatccaagctaagga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ttaagttgttggggttttttttcccccaagtacaattggcaacatgatccaagctaagga 226

                                    
Query: 481 gaatccattttctctagggtttcaa 505
           |||||||||||||||||||||||||
Sbjct: 225 gaatccattttctctagggtttcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |