BAC Information

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BAC

Clone NameMSMg01-149A02
Chromosome3 (Build37)
Map Location 40,758,852 - 40,759,273
singlet/doubletsinglet
Overlap geneLarp2
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik
Downstream genePgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149A02.T7 (MSMg01no149_a02.b1)MSMg01-149A02.TJ (MSMg01no149_a02.g1)
ACCAG351844AG351845
length690690
length of high quality
(start - end)
423 (70 - 492)399 (78 - 476)
definitionCHROMAT_FILE: MSMg01no149_a02.b1 PHD_FILE: MSMg01no149_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:06 2005CHROMAT_FILE: MSMg01no149_a02.g1 PHD_FILE: MSMg01no149_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCATCATAATTTGCGGCGCTAAACGACTCCTATTTCAAAAGGAGGGCGG
AATTCACTATGTATACTAGACTGGCCTCACAAGCCTTCCTAGTGCTAGGA
TTAAAGGCAAGTGCTACCATGCCTGGCGGCTATGTTGCTTTTTATCAACC
TACTTCCTCCCTTTTTTTTTTTTTTTTTTTTTCAGGAATCGTAAGTTTGC
TGTTAGTGCCCTCATGAAATACATCTTAAAAGCAAATTCTATTTTATTAT
AAAATAAGTATGTAATATAAAGATGTAAAATAGCACATATTATATATCCT
TATAATTTGTAAAAATAAAACTCTTGGGGCTTGTGCACACATACCACACA
GATGACCTTTTGATCTTGTGATATTCCCTTCAAAAAGCGTCATGTTACTG
ATTAATCTGTTTACTAATTTTTTAAAGACCTTTTTAACAATTACTTTCCA
ACAAGTGAATTCTATAGAACATATGAAACATAAAGTTTCATTCACAGTAC
TGGATGATTGCTGGGTGGTGGAACTTGCCTTTAACCCTAGTACTCAGGAG
GCAAAGAGGTAGGCTGATCTTTGAGTTTGAGGCCAGCCTGTTCTACAGAG
TGAGTTCAGGACAGCTAAAACCCATCAGAGAAACCTTTCCCTCAAAAACC
GAAACCATAACCAAACCATAACCCAAAAAGGTATTGAATG
CTCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTATGTAGACCAGGCTGGACTA
AAGAATGCATTTTTTAAAAAAAAAAGGTAAGTGTGGTAGCACATGCTTAC
AATCCCAATACTGTGGAGGCAAAGACAGGCATATCCCTGGGACTCACTGA
CTAGCCTGCCGAGCCAAGTCAGGGATCTTCAGATTCAGTGAGAGATCCCA
TCTCAAATAGAAATGAATGAATGGTAGGCAGTATGTGAGGAATGACACCG
GAAGTTGGTCTCTAACCTCCACATACATGTGTATCACACACACATGAATA
CACATATACATGCCTGTGGTGGTTTGACTAGAAATGGCCCCTATAGACTT
GTGTGTTTGAATGCTTGACCATAAGGAGTGACACTATTAGGAGGTGTGAC
CTTGTTGGAGTAGGTGTGGCCTTGTTGGAAGAAGTGTGTCACTGTGGGGG
ATGGGCTTTGAGCTCTCCTATGCTCAAGCTATGTCCAATTGTGGACCCTT
TTGCTGCTTCTAGATTCAGATGTAGAACTCTCCAGCTCCTTCTCCAGCAC
CATGCCTGCCTGGAAACTACCATGCTTCCCGCCATGATGATAATGAACTA
ACCCTTTGAAAACTGCAAGCCAGCCCTCATTCAAGGTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_a02.b1 MSMg01no149_a02.b1 CHROMAT_FILE:
MSMg01no149_a02.b1 PHD_FILE: MSMg01no149_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:06 2005
         (423 letters)



>mm_chr3_40758651_40759473
          Length = 823

 Score =  772 bits (399), Expect = 0.0
 Identities = 417/425 (98%), Gaps = 5/425 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   actggcctcacaagccttcctagtgctaggattaaaggcaagtgctaccatgcctggcgg 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  
Sbjct: 202 actggcctcacaagcctttctagtgctaggattaaaggcaagtgctaccatgcctggc-- 259

                                                                       
Query: 61  ctatgttgctttttatcaacctacttcctcccttttttttttttttttttttt--cagga 118
            ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 260 -tatgttgctttttatcaacctacttcctccctttttttttttttttttttttttcagga 318

                                                                       
Query: 119 atcgtaagtttgctgttagtgccctcatgaaatacatcttaaaagcaaattctattttat 178
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 319 atcgtaagtttgctgttagtgccctcatgaaatacatcttagaagcaaattctattttat 378

                                                                       
Query: 179 tataaaataagtatgtaatataaagatgtaaaatagcacatattatatatccttataatt 238
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tataaaataagtatataatataaagatgtaaaatagcacatattatatatccttataatt 438

                                                                       
Query: 239 tgtaaaaataaaactcttggggcttgtgcacacataccacacagatgaccttttgatctt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgtaaaaataaaactcttggggcttgtgcacacataccacacagatgaccttttgatctt 498

                                                                       
Query: 299 gtgatattcccttcaaaaagcgtcatgttactgattaatctgtttactaattttttaaag 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gtgatattcccttcaaaaagcgtcatgttactgattaatctgtttactaattttttaaag 558

                                                                       
Query: 359 acctttttaacaattactttccaacaagtgaattctatagaacatatgaaacataaagtt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 acctttttaacaattactttccaacaagtgaattctatagaacatatgaaacataaagtt 618

                
Query: 419 tcatt 423
           |||||
Sbjct: 619 tcatt 623


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 823
Length adjustment: 9
Effective length of query: 414
Effective length of database: 814
Effective search space:   336996
Effective search space used:   336996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)