Query= MSMg01no149_f04.b1 MSMg01no149_f04.b1 CHROMAT_FILE:
MSMg01no149_f04.b1 PHD_FILE: MSMg01no149_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:33 2005
(272 letters)
>mm_chr3_102258182_102258853
Length = 672
Score = 447 bits (231), Expect = e-130
Identities = 255/263 (96%)
Strand = Plus / Minus
Query: 9 gaattctgtttgtctttctagggaccgttggcttctggcatctttctactgttgagttgc 68
||||||||||||| ||||||||| |||||| |||||||||||||||| ||||||||||||
Sbjct: 443 gaattctgtttgtttttctaggggccgttgacttctggcatctttctgctgttgagttgc 384
Query: 69 tggaaggagccatttgttgatgggatttgttgtcagaaagaacagtctggggaagtgaac 128
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tggaaggggccatttgttgatgggatttgttgtcagaaagaacagtctggggaagtgaac 324
Query: 129 ttatggaggtttattcccactaggatggactcaaacagggaaaataaaccaccaaaggaa 188
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttaccgaggtttattcccactaggatggactcaaacagggaaaataaaccaccaaaggaa 264
Query: 189 tacatgcgagcttcttttgcttcacaggtactctcagacagcttgtgtgttgttttggtg 248
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 263 tacatgcgagcttcttttgctttacaggtactctcagacagcttgtgtgttgttttggtg 204
Query: 249 gtggtggtggtggtggtagattt 271
|||||||||||||||||||||||
Sbjct: 203 gtggtggtggtggtggtagattt 181
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space: 174369
Effective search space used: 174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no149_f04.g1 MSMg01no149_f04.g1 CHROMAT_FILE:
MSMg01no149_f04.g1 PHD_FILE: MSMg01no149_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:33 2005
(355 letters)
>mm_chr3_102104451_102105205
Length = 755
Score = 629 bits (325), Expect = 0.0
Identities = 350/363 (96%), Gaps = 10/363 (2%)
Strand = Plus / Plus
Query: 1 caccccttaaagcattgctttttgaatttatttgcttacttggacaaaagaagggaggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 caccccttaaagcattgctttttgaatttatttgcttacttggacaaaagaagggaggca 254
Query: 61 agaggatgaaaatgagacagaacagggcaggatagacagaattgaggggagagagagaga 120
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 255 agaggatgaaaatgagacagaacagggcaggatagacagaactgaggg--gagagagaga 312
Query: 121 gacagagagagagagagagac----agagagagagagagacagacagagagagagagaga 176
|||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||
Sbjct: 313 gacagagagagagagacagacagagagagagagagagagagagacagagagagagagaga 372
Query: 177 gagagag----agagagagagagagagagagagagagagagagagagaatgagaatgact 232
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gagagagagacagagagagagagagagagagagagagagagagagagaatgagaatgact 432
Query: 233 gaatctcagggagggagctccaattggaatcaaccagaaaggagttcctggggcagaagg 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gaatctcagggagggagctccaattggaatcaaccagaaaggagttcctggggcagaagg 492
Query: 293 agcagcttgcagtggtggcttctgatcgtgagatgtcatgagatagacccagcatgttta 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 agcagcttgcagtggtggcttctgatcgtgagatgtcatgagatagacccagcatgttta 552
Query: 353 att 355
|||
Sbjct: 553 att 555
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 169
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space: 258116
Effective search space used: 258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
