BAC Information

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BAC

Clone NameMSMg01-149H16
Chromosome3 (Build37)
Map Location 137,464,481 - 137,464,925
singlet/doubletsinglet
Overlap genenone
Upstream genePpp3ca, LOC668870, LOC100039447, Emcn, EG229862, Ddit4l, LOC668874
Downstream geneH2afz, Dnajb14, Map2k1ip1, Dapp1, EG329763, LOC100039528, Mttp, Rg9mtd2, 4930579F01Rik, Adh7, Adh1, Adh6a, LOC639769, Adh4, Adh5, Metap1, EG383925, EG668879, Eif4e, EG545570, LOC668881, LOC668882, Ppia-ps3_1437.1, Tspan5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149H16.T7 (MSMg01no149_h16.b1)MSMg01-149H16.TJ (MSMg01no149_h16.g1)
ACCAG352186AG352187
length705707
length of high quality
(start - end)
556 (43 - 598)446 (77 - 522)
definitionCHROMAT_FILE: MSMg01no149_h16.b1 PHD_FILE: MSMg01no149_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:45 2005CHROMAT_FILE: MSMg01no149_h16.g1 PHD_FILE: MSMg01no149_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGAGGATCCGCGG
AATTCAGCTGTGTCGTCTTTTAGATAGTATATGCCCATCATGAAATAAAT
GCTATAGCTGTTATGGGGTCAATAACTACGTTCTGGTCAGAGTTGAGGAC
CACTGGACAGGAAAGGATTCACATCTGGTACTGTAAACCTGGGCATAAAC
CTATGGCTAAAAGGCCACAGGCCTGATTGGAGAAGCTACTCTGCTGTTTT
ACTAAATGGACACAATGAACTTGCCTTTAAATATTTGTTTATATCCCATG
ATTAACATGCTGTCATCTTTGAAGAGAGAGATGCTCTTTGCAATGTGTGG
TGATGACTGCAGACTCTTTTGGAGGGGAGAGGGGTGTTTCAAGAAAGGGT
TTCTCTGTATAGCTCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTA
GGCCAGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTA
AGACTGCAGACTTATACAGTGCCAAAATAATGAGCATAAGTGACTGAGAA
AGGCGCAGCTCTAAACGGGACGTCGCTATCGTCCCTGCAAAGCTCAGGGA
GCATGGCCAGAAGGAACAGCTGGACAGGTTGGAGGGTGTGTTACGACATC
CACCCCCTAGGGTGCCATTGATGCTGTCATGAACCCGCGTCATCTGTGAT
CAGAC
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTCCCTAAGAACACCTTAAACAA
CGTAGTGTCAGAAGCCTCCTAAACCAGACTCTGGCTACTGATAAGATACA
AGGGTGTGGCTCCTAAGAAGCCCCACCCACAGCACCTGCACTGGGTGCCC
CCTTCCTTAGGCACTCTCTCCTTTAATGCCAGTCATTAAATCTGCATTAA
AGGTGTTGCCTCAGAAACTCTAACTTTGCTTTCTACTGACCAGCCTGGAA
TTTCTGTGCTGCAGTCAGGTCGTCTCTGAAACGACTCAGCACCCCCAATG
AGCAGTTGCTGCTCTGCCTACCATGACAAAGGGCGTCACGCCCGCTCATC
CCGGGCTTGTGCAATGCCCTCAGAACTCGGTCAGGGGCTCTGTGCACACA
CAGGGACCTTGATTCCCTTGCCTTGTAGTCTTGAAGTTAAGCCACTGTTG
TAACTCAACAGTCCACTCAGCGGGGTACAGAAGAAGGCGGTAGGAAGGAA
GCCACATTGAAAATGGTGCCTGTGAACTGCAGATAGGATATGGGGACAGG
TTTGGAAGGAATGTCATTGTCCTACTTTCTGGGACTTAGTCATGACTGCC
AGTCTCCCTACAGAGACGTGAAAGGCCTCCTTGATGCACCCGAGCTCTGA
ACCTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_h16.g1 MSMg01no149_h16.g1 CHROMAT_FILE:
MSMg01no149_h16.g1 PHD_FILE: MSMg01no149_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:46 2005
         (446 letters)



>mm_chr3_137464281_137465127
          Length = 847

 Score =  791 bits (409), Expect = 0.0
 Identities = 436/445 (97%), Gaps = 1/445 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attccctaagaacaccttaaacaacgtagtgtcagaagcctcctaaaccagactctggct 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 attccctaagaacaccttaaacaacttagtgtcagaagcctcctaaaccagactctggct 260

                                                                       
Query: 61  actgataagatacaagggtgtggctcctaagaagccccacccacagcacctgcactgggt 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 actgataagatacaagggtgtggctcctgagaagccccacccacagcacctgcactgggt 320

                                                                       
Query: 121 gcccccttccttaggcactctctcctttaatgccagtcattaaatctgcattaaaggtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcccccttccttaggcactctctcctttaatgccagtcattaaatctgcattaaaggtgt 380

                                                                       
Query: 181 tgcctcagaaactctaactttgctttctactgac-cagcctggaatttctgtgctgcagt 239
           ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 381 tgcctcagaaactctaactttgcttcctactgacgcagcctggaatttctgtgctgcagt 440

                                                                       
Query: 240 caggtcgtctctgaaacgactcagcacccccaatgagcagttgctgctctgcctaccatg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggtcgtctctgaaacgactcagcacccccaatgagcagttgctgctctgcctaccatg 500

                                                                       
Query: 300 acaaagggcgtcacgcccgctcatcccgggcttgtgcaatgccctcagaactcggtcagg 359
           |||||||| ||||||||| |||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 501 acaaagggtgtcacgcccactcatcccaggcttgtgcaatgccctcagaacacggtcagg 560

                                                                       
Query: 360 ggctctgtgcacacacagggaccttgattcccttgccttgtagtcttgaagttaagccac 419
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggatctgtgcacacacagggaccttgattcccttgccttgtagtcttgaagttaagccac 620

                                    
Query: 420 tgttgtaactcaacagtccactcag 444
           |||||||||||||||||||||||||
Sbjct: 621 tgttgtaactcaacagtccactcag 645


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 847
Length adjustment: 10
Effective length of query: 436
Effective length of database: 837
Effective search space:   364932
Effective search space used:   364932
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)