Query= MSMg01no149_m19.b1 MSMg01no149_m19.b1 CHROMAT_FILE:
MSMg01no149_m19.b1 PHD_FILE: MSMg01no149_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:11 2005
(654 letters)
>mm_chr3_68630971_68632024
Length = 1054
Score = 1174 bits (607), Expect = 0.0
Identities = 610/611 (99%)
Strand = Plus / Minus
Query: 44 cttcaggaaaatgacttgctgtaataacaacaccaaaaggcattcatattgacaatgatc 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1053 cttcaggaaaatgacttgctgtaataacaacaccaaaaggcattcatattgacaatgatc 994
Query: 104 agggtttccaaagcagagtttaaatagtgacatttcttaggctgcggtgatgctagcgcc 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993 agggtttccaaagcagagtttaaatagtgacatttcttaggctgcggtgatgctagcgcc 934
Query: 164 acggatcttacagagaacattttgcttctgatatttataacttagctcagcctctttcta 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 acggatcttacagagaacattttgcttctgatatttataacttagctcagcctctttcta 874
Query: 224 ttatttatatttaaatatagaaagaaatcttttcctgttcctcttgctttggattttgct 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 ttatttatatttaaatatagaaagaaatcttttcctgttcctcttgctttggattttgct 814
Query: 284 tttcaaacccacgcaaacccatgagtcataaatgagactgtggaaatgaatggtccgcat 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 tttcaaacccacgcaaacccatgagtcataaatgagactgtggaaatgaatggtccgcat 754
Query: 344 cacacgagagcacacagtggctacccacatgaacccagacattccaactatcaaggtagg 403
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 cacacaagagcacacagtggctacccacatgaacccagacattccaactatcaaggtagg 694
Query: 404 ttaaaattgcaaaagtctcaatatctatgttaataccattcagaaaatccagaagttaca 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 ttaaaattgcaaaagtctcaatatctatgttaataccattcagaaaatccagaagttaca 634
Query: 464 gaggtaacacattactctcattcaacaaaatacacttacatacaaacacacctttgaact 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 gaggtaacacattactctcattcaacaaaatacacttacatacaaacacacctttgaact 574
Query: 524 ttcacatacatactgtagaacatatgtagctaatggaatggaataattgggactcagctt 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ttcacatacatactgtagaacatatgtagctaatggaatggaataattgggactcagctt 514
Query: 584 ctaatcttggctctctaattcctggttagctggcataagtacatccatctataagacaga 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ctaatcttggctctctaattcctggttagctggcataagtacatccatctataagacaga 454
Query: 644 cattagtctgt 654
|||||||||||
Sbjct: 453 cattagtctgt 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no149_m19.g1 MSMg01no149_m19.g1 CHROMAT_FILE:
MSMg01no149_m19.g1 PHD_FILE: MSMg01no149_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:11 2005
(585 letters)
>mm_chr3_68465825_68466809
Length = 985
Score = 1004 bits (519), Expect = 0.0
Identities = 572/591 (96%), Gaps = 7/591 (1%)
Strand = Plus / Plus
Query: 1 agaaaagtgagggtttttcttttcttttcttttct---ttctttcttctttctttctttc 57
|||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||
Sbjct: 196 agaaaagtgagggtttttctttccttttc-tttctttcttctttcttctttctttctttc 254
Query: 58 tttctttctttctttcttt-ttt-ttt-ttttttttaaccatatctctacactgagggca 114
|||| |||||||||||||| ||| ||| |||||||| ||||| |||||||||| ||||||
Sbjct: 255 tttccttctttctttctttctttctttctttttttttaccatgtctctacactaagggca 314
Query: 115 aggtttgttccaaaattcagactacttttcatgggaagacgctgtcaggagtgtcttaac 174
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 315 aggtttgttccaaaattcagactacttttcatgggaagacgccgtcagaagtgtcttaac 374
Query: 175 agttcttaacatctcatcatttatctggtaaggggtgttaagtgcgtttcctggatatga 234
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 375 agttcttaacatctcatcatttatctggtaaggggtgttaagtgcgtttcctggatttga 434
Query: 235 aggaaggtggtctcggttgattcagcagtatctgctaaaattaggcattatctcagctgg 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aggaaggtggtctcggttgattcagcagtatctgctaaaattaggcattatctcagctgg 494
Query: 295 atctcccacatttgtggcaggaggagatctttagtgagaggcaaaaggttccgattcttg 354
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 495 atctcccacgtttgtggcaggaggagatctttagtgagaggcaaaaggttctgattcttg 554
Query: 355 cattttttacaacccatttctggctaagagtgacttcactggacaatcgcaaccgcaaag 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cattttttacaacccatttctggctaagagtgacttcactggacaatcgcaaccgcaaag 614
Query: 415 aaaagaggaaacactcttcctgtcccgggcgtcctgagggaaagagacttgaactctacc 474
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 615 aaaagaggaaacactcttcctgtcccgggcatcctgagggaaagagacttgaactctacc 674
Query: 475 actgccactggtcatagccaaaactggctcaggtcttgctgtggcccaactcctgccaag 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 actgccactggtcatagccaaaactggctcaggtcttgctgtggcccaactcctgccaag 734
Query: 535 agcagacactcatttttttccaataatccaaactagaagcagcaacaaaat 585
|||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 735 agcagacactcattttttcccaataatccaaactagaagcagcaacaaaat 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
