BAC Information

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BAC

Clone NameMSMg01-149P09
Chromosome3 (Build37)
Map Location 85,502,972 - 85,503,453
singlet/doubletsinglet
Overlap gene9930021J17Rik
Upstream geneTmem154, LOC624889, Fbxw7, Dear1, LOC100042237, LOC100042125, Pet112l
Downstream geneGlt28d2, LOC100042265, Gm1019, Sh3d19, Rps3a, LOC634201, Lrba, Mab21l2, EG667024, LOC100042319
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149P09.T7 (MSMg01no149_p09.b1)MSMg01-149P09.TJ (MSMg01no149_p09.g1)
ACCAG352533AG352534
length696695
length of high quality
(start - end)
597 (45 - 641)482 (71 - 552)
definitionCHROMAT_FILE: MSMg01no149_p09.b1 PHD_FILE: MSMg01no149_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:24 2005CHROMAT_FILE: MSMg01no149_p09.g1 PHD_FILE: MSMg01no149_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCCACAGTTCACCACTTCAAATGGAAAACTCAGTGGCATTGACCA
TGTTTATAATAGTGTGCAACCACTGCCTTTCTAATTTTAAAACTTTTTAT
TACTCCTTAAGAGTCCTTTGTACTCATTGCATGACTACGGGAGTCTGCTT
TCTCTGTGATTATAATGGTCTATTTTGGATATTTCATATAAAATACTCAA
TAAGTGACTGTGTGTGTGTTTCTTTTACTCAGTACCATGTTTTGCAGTTT
ATTTAGAAGTTCCTTCAGTATTTTATTCCTGTTTATGGCTGAATAATGTT
TTACTCTCTCTCTATATATAACAGTCTTTGTATTTATCTTAATTTAACTT
GGGTTATTTCCATCTTTTAGTTATTATGAATCGAGATTCTGGGAACATTT
ATATGTTTGGATATAACTAGGATTACTGACTCATTTGCTTAGTAAGGAAC
CACAAAATGTTTTATGGTAGATATACCATATTATACTCTCACTAATCATG
TATGATGATTTTATTTTACTGTATCCTTACCAACAGCTGTTATACACTTA
TATACTAAATAATTGTTCTTTTATGATAGACTTTCTGGTAAGTGTGGAGT
AGTTTCCTGTTGCAGTTGAGTTGTAAGGTTGAGAGCTGTCATGTGA
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCCACACAATGCAGAGACAGAAACCACACA
GGTGTCTGCCAGAACAAATTCAATAATTCTAGTCATTGTGGTCATTTTCC
TCCGTTATCCACAAACCTGCTCATCATCTGGCACTGGATGGTCACAGCAG
AGCATCTCATCAGAATGCAAGTCAAACAGAAACAAGGGGCAGCCTTTCTT
ACAGGAAGCCAGCATGGGGCAAGAGACAGTCATGGTAAGCTAGTAACAAG
CAGGCCAACCCCCTCTGCTGGGCTCCTCACCCTCCATTTCCTTACAACTC
ACCTGAAGGTAAACTCACAGGGCGTTTTCTGCTGATCAATTTTGAATGTT
CTCTTAGGGTGGTGCATGGGGAAGAATAAATGACTCACACCAAACTTCAG
ATGGGCTCTTTCCCTCTTGTGTCTGCACTTGTTTCCGAGGTAACCCACCT
GGCTTCCATGGATAAGATGGGGTTTTGTGTGAGTTTTGTTTTGTGCCTTC
TGTGTGAGGGAGGGTGAGGCCCTCTGTGCACTTGTTGGGATTGAAAAGAG
AAATCTAATTTCTCACTTCAAATCAAAAGCCACTGAAAGTTTAATTTCTT
CCTCAAAATTGGAACTAAGCTCCACAGATAAAAACACATTATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_p09.g1 MSMg01no149_p09.g1 CHROMAT_FILE:
MSMg01no149_p09.g1 PHD_FILE: MSMg01no149_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:24 2005
         (482 letters)



>mm_chr3_85502772_85503653
          Length = 882

 Score =  917 bits (474), Expect = 0.0
 Identities = 480/482 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccacacaatgcagagacagaaaccacacaggtgtctgccagaacaaattcaataattct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccacacaatgcagagacagaaaccacacaggtgtctgccagaacaaattcaataattct 260

                                                                       
Query: 61  agtcattgtggtcattttcctccgttatccacaaacctgctcatcatctggcactggatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtcattgtggtcattttcctccgttatccacaaacctgctcatcatctggcactggatg 320

                                                                       
Query: 121 gtcacagcagagcatctcatcagaatgcaagtcaaacagaaacaaggggcagcctttctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcacagcagagcatctcatcagaatgcaagtcaaacagaaacaaggggcagcctttctt 380

                                                                       
Query: 181 acaggaagccagcatggggcaagagacagtcatggtaagctagtaacaagcaggccaacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaggaagccagcatggggcaagagacagtcatggtaagctagtaacaagcaggccaacc 440

                                                                       
Query: 241 ccctctgctgggctcctcaccctccatttccttacaactcacctgaaggtaaactcacag 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctctgctgggctcctcaccctccgtttccttacaactcacctgaaggtaaactcacag 500

                                                                       
Query: 301 ggcgttttctgctgatcaattttgaatgttctcttagggtggtgcatggggaagaataaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcgttttctgctgatcaattttgaatgttctcttagggtggtgcatggggaagaataaa 560

                                                                       
Query: 361 tgactcacaccaaacttcagatgggctctttccctcttgtgtctgcacttgtttccgagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgactcacaccaaacttcagatgggctctttccctcttgtgtctgcacttgtttccgagg 620

                                                                       
Query: 421 taacccacctggcttccatggataagatggggttttgtgtgagttttgttttgtgccttc 480
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taacccacctggcgtccatggataagatggggttttgtgtgagttttgttttgtgccttc 680

             
Query: 481 tg 482
           ||
Sbjct: 681 tg 682


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)