Query= MSMg01no149_p18.b1 MSMg01no149_p18.b1 CHROMAT_FILE:
MSMg01no149_p18.b1 PHD_FILE: MSMg01no149_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:25 2005
(688 letters)
>mm_chr3_138516777_138517864
Length = 1088
Score = 1236 bits (639), Expect = 0.0
Identities = 651/655 (99%)
Strand = Plus / Minus
Query: 4 ggaattcatttgcataccggacaagctgtcaccattgcacaggcagcttgaagatgggaa 63
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 655 ggaattcatttgcatacaggacaagctgtcgccattgcacaggcagcttgaagatgggaa 596
Query: 64 gctgagctctcggcaggcactgccttgggagcgctccatgtgaatacactctggaatttt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gctgagctctcggcaggcactgccttgggagcgctccatgtgaatacactctggaatttt 536
Query: 124 ccttttctattaggatttttttcttcttcttgagagcgatgaagaacagcatgagggaga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ccttttctattaggatttttttcttcttcttgagagcgatgaagaacagcatgagggaga 476
Query: 184 tgaataagctatgtttatttctggttcaaagatgccgctaacttcttgttctctgaataa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tgaataagctatgtttatttctggttcaaagatgccgctaacttcttgttctctgaataa 416
Query: 244 ggcaccgtgagggtgaagtgagagatgaaattatgtaccccaaaccaacatgcctcagaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ggcaccgtgagggtgaagtgagagatgaaattatgtaccccaaaccaacatgcctcagaa 356
Query: 304 atgactcagatgaatgtaatgagtcaatgtggaaatagacatttcattattgaagattaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 atgactcagatgaatgtaatgagtcaatgtggaaatagacatttcattattgaagattaa 296
Query: 364 gaccactggaccgtcccaaggtaaaatgacagtatgggggaactgtacaaatgataaaca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gaccactggaccgtcccaaggtaaaatgacagtatgggggaactgtacaaatgataaaca 236
Query: 424 gtaacatggcccgataagggagaacttgaatggacaagctctggttcaaacctggctcca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 gtaacatggcccgataagggagaacttgaatggacaagctctggttcaaacctggctcca 176
Query: 484 gcatttaccaaatgtgaccctaggcagcctaacagactagggtttgcattgatacagtta 543
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 175 gcatttaccaaatgtgaccctaggcagcctaacagactagggttcgcattgatacagtta 116
Query: 544 ctgtatttgcaaaggcagacataagaagaagtggctgagacgttttgtgtgcagtagata 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 ctgtatttgcaaaggcagacataagaagaagtggctgagacgttttgtgtgcagtagata 56
Query: 604 cttaataagcacacattgctgctgcaattaatatgtaatagggaacgtttcctag 658
||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 55 cttaataagcacacattgctgctgcaattaaaatgtaatagggaacgtttcctag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space: 730884
Effective search space used: 730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no149_p18.g1 MSMg01no149_p18.g1 CHROMAT_FILE:
MSMg01no149_p18.g1 PHD_FILE: MSMg01no149_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:26 2005
(512 letters)
>mm_chr3_138444909_138445820
Length = 912
Score = 828 bits (428), Expect = 0.0
Identities = 504/558 (90%), Gaps = 47/558 (8%)
Strand = Plus / Plus
Query: 1 caggcacgaaaataagcaagaaaatgcatggcctcttcaatcctagcctcaaagtcacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 caggcacgaaaataagcaagaaaatgcatggcctcttcaatcctagcctcaaagtcacat 215
Query: 61 gacatcatttccaccataggcctgcccagatgcacaaa---tggccttaggtctcagttc 117
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 216 gacatcatttccaccataggcctgcccagatgcacaaagaatggccttaggtctcagttc 275
Query: 118 tccgt----------------------------aacactcagtgctaccttgccccagag 149
||||| |||||||||||||||||||||||||||
Sbjct: 276 tccgtgaacagagagtctgaggccgcctttattaacactcagtgctaccttgccccagag 335
Query: 150 cctgaagcccctcccccacgaagtcatatgttgagacctattccctagtcctataatact 209
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 336 tctgaagcccctcccccacgaagtcatatgttgagacctattccccactcctataatact 395
Query: 210 gtaccctggggctttgatgattcgggatgcctgccccctataaaggaagcccagggtacc 269
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 396 gtaccctggggctttgatgatacgggatgcctgcccccaataaaggaagcccagggtacc 455
Query: 270 atctaagaagcggcgagcggtttcacatcctcaggtcctgtgacc--------------- 314
|||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 456 atctaagaagtggcgagcggtttcacatcctcaggtcctgtgaccctggatctctcagcc 515
Query: 315 tccagactgtgagacgaaatgtctgttggtttttagttactcctccctggtaatttcact 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tccagactgtgagacgaaatgtctgttggtttttagttactcctccctggtaatttcact 575
Query: 375 tagcagtcacctgaacagacagccgctaatcaatctgtgctctgtcaggtcgctccttgg 434
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tagcagtcacctga-cagacagccgctaatcaatctgtgctctgtcaggtcgctccttgg 634
Query: 435 taaaccgctcacttctttgcatcattatttaattgatttttgcttttccagtgagagggt 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 taaaccgctcacttctttgcatcattatttaattgatttttgcttttccagtgagagggt 694
Query: 495 aagctggtttgttgttgt 512
|||||||||| |||||||
Sbjct: 695 aagctggttttttgttgt 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
