BAC Information

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BAC

Clone NameMSMg01-151E18
Chromosome3 (Build37)
Map Location 112,312,245 - 112,312,423
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625585, EG229746, LOC668717
Downstream geneUtp14B-ps, EG433643, OTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151E18.T7 (MSMg01no151_e18.b1)MSMg01-151E18.TJ (MSMg01no151_e18.g1)
ACCAG353501AG353502
length773824
length of high quality
(start - end)
317 (45 - 361)179 (77 - 255)
definitionCHROMAT_FILE: MSMg01no151_e18.b1 PHD_FILE: MSMg01no151_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:04 2005CHROMAT_FILE: MSMg01no151_e18.g1 PHD_FILE: MSMg01no151_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAAGCTTACGGTCCTCTTCAAGGACTTTCTAGGAGCCATTGGAACAC
TTGTGGAGGCTTAGCTATATGTCAAAAATCAATTCTTAAAGGCACTTATA
ATAAAATAATACTGTATATTAAACCATCCCTGCATCCTGGAATGAAACCT
ACTTGGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCAGTTAGT
GAGAATTTTATTGAGTATTTTTGCATTGATATTCATAAGGGAAATTGGTC
TGAAGTTCTCTATCTTTATTGGGTCTTTCTGTGGTTCAGGTATCACAATA
ATTGTGGCTTCACAGAATGAATTGCTTAGAGCACCTTCTGTCCCTACTTT
GTGTAACCCCCCGATCTTCAACTGCAATTACATCTTCTTTGATCGTCTGA
TATAACTCTGAAACACCCCCCATCTCCCCCCCTTTCTTTTCTTTCCTCCT
ATTTTTCTCCCCTTCTCCTCCCTTTCCTCTCTTTCTCCTTTACTCTTTCC
TTCTCCTCCCTCTCCCTTCTTCCTTTCTTACTCCCTTTTTGCCTTTCCCC
CTCCTTTTCCTCCTCTTTTACCCACCCCTTTCCCCCTTCTTCCTCCCCCC
CCCCCACCCCTTCTCTCTCCCCCCCCCTACTATCCCCCTCTCCCCTCCCC
TCTCCTCCCCCCTTTCTCCCTTTTTCTCCCCCTCCCCCTTCCTCCCTTTT
TTCTTTTTCTTCCCTCTCCTCCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGAATTAATTTCAGCATACATAG
TAAAACTTTTTATCTCTCTATACAGAGTTGTAATTCATGTTCTGGGTGAA
CAAACTGGAATACCTGTTTTCTTCTTATTTGTTCAGATATATTTTAGCAA
TGACATTAAAATATGTGATAGGATTAGGAAAGATGAGGGAAAATGTTAAA
CATGGTGTTGCTGAAATTCGCTTCTGCTTTCAATAACAGCCCTAGTAGTA
ATCTCCTCTATGATAGACTTGTCTTTTTTTCCTCCATTCTCACTTAGAAT
CCCCTCACCTATGTATATATTTACCACATACCTGCACTTACCACGCCCGA
TGCTGTTATTATTAAATTTAGGCGCAAACATTCCCCCCTAAATCTCTTAC
TTAAACCCATTCTCCTTTCCACCCTACTATTTGCTCCCCCCCCTACCTTT
CTCCTGTTCTCCCCCCATCCCCCCCCTTTTACTTCCCATCCATTCCTGTC
CTTTCCCCCCCCATTTTCTTCCCCCTTTTCCCCCCACCTTCTTTCTTCCC
CCCTTCACTTTCCCCCCTTTACTTATTCCCCCTCATTTTAAATCCGTCCC
CGCGTCCTCAAACAATATAATTCCCATCCACCTTCCATTTACCCCCCTCT
CTTCCTTTCTCTCGCCCTTACCCCAACTTTTTTTTGTACAACCATATCTT
GATAATACTCCTTCACTCCCCTACAACCAATGCTTTACTCCGCCCCTAAT
AACTCCATCTATTAACCATTTCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_e18.g1 MSMg01no151_e18.g1 CHROMAT_FILE:
MSMg01no151_e18.g1 PHD_FILE: MSMg01no151_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:04 2005
         (179 letters)



>mm_chr3_112312045_112312623
          Length = 579

 Score =  346 bits (179), Expect = e-100
 Identities = 179/179 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaattaatttcagcatacatagtaaaactttttatctctctatacagagttgtaattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgaattaatttcagcatacatagtaaaactttttatctctctatacagagttgtaattc 260

                                                                       
Query: 61  atgttctgggtgaacaaactggaatacctgttttcttcttatttgttcagatatatttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgttctgggtgaacaaactggaatacctgttttcttcttatttgttcagatatatttta 320

                                                                      
Query: 121 gcaatgacattaaaatatgtgataggattaggaaagatgagggaaaatgttaaacatgg 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaatgacattaaaatatgtgataggattaggaaagatgagggaaaatgttaaacatgg 379


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 579
Length adjustment: 8
Effective length of query: 171
Effective length of database: 571
Effective search space:    97641
Effective search space used:    97641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)